RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 WDR20Q8TBZ3 569 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 SLC13A3Q8WWT9 602 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 N4BP2L2Q92802 583 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-227ENST00000557269 MTFMTQ96DP5 389 aaKnown RBP12.23□□□□□ -0.45
SHMT2-227ENST00000557269 THAP11Q96EK4 314 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 SPRY4Q9C004 299 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 NRSN2Q9GZP1 204 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 RHBGQ9H310 441 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 KLHL31Q9H511 634 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 FANCEQ9HB96 536 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 ASCL3Q9NQ33 180 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 ENAMQ9NRM1 1142 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 TRPS1Q9UHF7 1281 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 ZFP69BQ9UJL9 534 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 RUVBL1Q9Y265 456 aaKnown RBP12.23□□□□□ -0.45
SHMT2-227ENST00000557269 MSRB2Q9Y3D2 182 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 PCDHGA3Q9Y5H0 932 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 SPTBN2O15020 2390 aa12.23□□□□□ -0.45
SHMT2-227ENST00000557269 MDC1Q14676 2089 aaKnown RBP12.22□□□□□ -0.45
SHMT2-227ENST00000557269 TEX51A0A1B0GUA7 166 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 HYKKA2RU49 373 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 CDRT15L2A8MXV6 281 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 TMEM233B4DJY2 109 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 C4orf51C9J302 202 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 ZSCAN9O15535 394 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-227ENST00000557269 NDUFS4O43181 175 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 ZNF749O43361 778 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 BRINP1O60477 761 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 SH3BGRLO75368 114 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 NTRK1P04629 796 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 SERPIND1P05546 499 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 NEFHP12036 1026 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 SERPINB3P29508 390 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 AHRP35869 848 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 HTR6P50406 440 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 PKNOX1P55347 436 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 ABCE1P61221 599 aaKnown RBP12.22□□□□□ -0.45
SHMT2-227ENST00000557269 NAA20P61599 178 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 STX3Q13277 289 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 HIST2H2ACQ16777 129 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-227ENST00000557269 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.22□□□□□ -0.45
SHMT2-227ENST00000557269 CLEC6AQ6EIG7 209 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 HIST2H2AA3Q6FI13 130 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 BPHLQ86WA6 291 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-227ENST00000557269 HUS1BQ8NHY5 278 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 NT5CQ8TCD5 201 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 AGR3Q8TD06 166 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 ZNF473Q8WTR7 871 aaKnown RBP12.22□□□□□ -0.45
SHMT2-227ENST00000557269 RERGQ96A58 199 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-227ENST00000557269 C10orf90Q96M02 699 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 SORT1Q99523 831 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 MTERF1Q99551 399 aaKnown RBP12.22□□□□□ -0.45
SHMT2-227ENST00000557269 TRMOQ9BU70 441 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 DDA1Q9BW61 102 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 PITHD1Q9GZP4 211 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-227ENST00000557269 MANSC1Q9H8J5 431 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 INTS9Q9NV88 658 aaKnown RBP12.22□□□□□ -0.45
SHMT2-227ENST00000557269 IRAK4Q9NWZ3 460 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 KNTC1P50748 2209 aa12.22□□□□□ -0.45
SHMT2-227ENST00000557269 MAGEB17A8MXT2 336 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 TMEM114B3SHH9 223 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 MANBAO00462 879 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 SCRG1O75711 98 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 KIAA0754O94854 1291 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 ETHE1O95571 254 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 B3GALT4O96024 378 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 TGFB1P01137 390 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 PDYNP01213 254 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 ITGAXP20702 1163 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 GRK2P25098 689 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 SLC5A2P31639 672 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 HNRNPH1P31943 449 aaKnown RBP12.21□□□□□ -0.45
SHMT2-227ENST00000557269 SLC1A6P48664 564 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 RAB15P59190 212 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 PWP1Q13610 501 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 DDX39BQ13838 428 aaKnown RBP12.21□□□□□ -0.45
SHMT2-227ENST00000557269 UGT3A2Q3SY77 523 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 TCTE1Q5JU00 501 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 FRG2Q64ET8 278 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 TMEM214Q6NUQ4 689 aaKnown RBP12.21□□□□□ -0.45
SHMT2-227ENST00000557269 TLDC1Q6P9B6 456 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 IGF2-ASQ6U949 168 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 SCIMPQ6UWF3 145 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 CEACAM20Q6UY09 585 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 PRSS41Q7RTY9 318 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 TMEM126BQ8IUX1 230 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 GPR135Q8IZ08 494 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 SHISA5Q8N114 240 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 TBC1D19Q8N5T2 526 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 OR8K5Q8NH50 307 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 METTL6Q8TCB7 284 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 SREK1Q8WXA9 508 aaKnown RBP12.21□□□□□ -0.45
SHMT2-227ENST00000557269 CCT6BQ92526 530 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 ZNF75CPQ92670 426 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-227ENST00000557269 UBE2E3Q969T4 207 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 FRG2BQ96QU4 278 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 F2RL3Q96RI0 385 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 HBEGFQ99075 208 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 SLC6A16Q9GZN6 736 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 AKIRIN1Q9H9L7 192 aaPredicted RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms