RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	STATH	P02808	62 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	ZNF24	P17028	368 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	HRH2	P25021	359 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	ADAR	P55265	1226 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	RPS15A	P62244	130 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	SFT2D3	Q587I9	215 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	RNF187	Q5TA31	235 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	MEI1	Q5TIA1	1274 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	PRSS41	Q7RTY9	318 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	PRUNE1	Q86TP1	453 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	REXO1L1P	Q8IX06	675 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	SHISA5	Q8N114	240 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	LGI4	Q8N135	537 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	CCDC89	Q8N998	374 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	LPGAT1	Q92604	370 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	IL22	Q9GZX6	179 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	ANKH	Q9HCJ1	492 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	BFAR	Q9NZS9	450 aa		11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	DRG1	Q9Y295	367 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	REXO2	Q9Y3B8	237 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-223	ENST00000556689	NF1	P21359	2839 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	GOLGA8K	D6RF30	607 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	GOLGA8T	H3BQL2	631 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	ZBTB14	O43829	449 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	KIF5C	O60282	957 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	SLC25A12	O75746	678 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	NADK	O95544	446 aa	Predicted RBP	11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	SYF2	O95926	243 aa	Known RBP	11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	FTCD	O95954	541 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	IL1RN	P18510	177 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	IL10	P22301	178 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	PTGS2	P35354	604 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	CYB561	P49447	251 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	ART1	P52961	327 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	KCNJ11	Q14654	390 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	USP10	Q14694	798 aa	Known RBP	11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	ABRAXAS2	Q15018	415 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	TYSND1	Q2T9J0	566 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	RNFT1	Q5M7Z0	435 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	TMEM211	Q6ICI0	200 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	TMEM214	Q6NUQ4	689 aa	Known RBP	11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	CEP128	Q6ZU80	1094 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	VN1R4	Q7Z5H5	301 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	FGD2	Q7Z6J4	655 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	KIAA1328	Q86T90	577 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	RPS19BP1	Q86WX3	136 aa	Known RBP	11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	CPSF7	Q8N684	471 aa	Known RBP	11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	CAMKV	Q8NCB2	501 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	FBXO15	Q8NCQ5	510 aa	Predicted RBP	11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	ASB11	Q8WXH4	323 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	THAP11	Q96EK4	314 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	MFSD3	Q96ES6	412 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	MACROD1	Q9BQ69	325 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	TNFRSF10D	Q9UBN6	386 aa		11.9	□□□□□ -0.5
SHMT2-223	ENST00000556689	MAGEB17	A8MXT2	336 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	GFY	I3L273	518 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	ZSCAN12	O43309	604 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	NME2P1	O60361	137 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	CDC123	O75794	336 aa	Predicted RBP	11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	CCDC175	P0C221	793 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	ZSCAN5DP	P0CG00	497 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	NME2	P22392	152 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	ARNT	P27540	789 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	PTGER1	P34995	402 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	RPL22	P35268	128 aa	Known RBP	11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	OR4D2	P58180	307 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	SLC26A5	P58743	744 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	RHAG	Q02094	409 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	SNX1	Q13596	522 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	TTLL9	Q3SXZ7	439 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	ZNF468	Q5VIY5	522 aa	Predicted RBP	11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	CES3	Q6UWW8	571 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	LRRC56	Q8IYG6	542 aa	Predicted RBP	11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	POGLUT1	Q8NBL1	392 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	LILRB4	Q8NHJ6	448 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	FAM57A	Q8TBR7	257 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	ELP5	Q8TE02	316 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	C1orf54	Q8WWF1	131 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	ASB5	Q8WWX0	329 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	TMEM125	Q96AQ2	219 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	PEX11G	Q96HA9	241 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	OR1F2P	Q96R84	312 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689	KIFC1	Q9BW19	673 aa		11.89	□□□□□ -0.51
SHMT2-223	ENST00000556689		A0A1B0GTH9	108 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	USP27X	A6NNY8	438 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	RDH16	O75452	317 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	TPO	P07202	933 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	CD99	P14209	185 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	IGFBP2	P18065	325 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	MGAT1	P26572	445 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	TPP2	P29144	1249 aa	Predicted RBP	11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	CLCN7	P51798	805 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	MPP1	Q00013	466 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	RPS6KA1	Q15418	735 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	CES4A	Q5XG92	561 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	PDSS2	Q86YH6	399 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	KCT2	Q8NC54	265 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	ACRBP	Q8NEB7	543 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	SLC13A3	Q8WWT9	602 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	RND1	Q92730	232 aa		11.88	□□□□□ -0.51

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