RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 GTF2A2P52657 109 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 USP17L24Q0WX57 530 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 CDH18Q13634 790 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 FAM219BQ5XKK7 198 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 FAM131AQ6UXB0 335 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 NUDT18Q6ZVK8 323 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 SHFQ7M4L6 423 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 TRMT11Q7Z4G4 463 aaKnown RBP9.16□□□□□ -0.94
CLIP1-214ENST00000540539 LUZP2Q86TE4 346 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 PGBD3Q8N328 593 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 ZNF655Q8N720 491 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-214ENST00000540539 CDYL2Q8N8U2 506 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 AVL9Q8NBF6 648 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 SETD9Q8NE22 299 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 DUSP18Q8NEJ0 188 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 AKR7LQ8NHP1 331 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 WDR20Q8TBZ3 569 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 NXPE2Q96DL1 559 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 MTFMTQ96DP5 389 aaKnown RBP9.16□□□□□ -0.94
CLIP1-214ENST00000540539 PABPC5Q96DU9 382 aaKnown RBP9.16□□□□□ -0.94
CLIP1-214ENST00000540539 WDFY2Q96P53 400 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 CSPG4P5Q96PW8 444 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 SLC38A3Q99624 504 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 PDCD10Q9BUL8 212 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 BARHL1Q9BZE3 327 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 NKX6-2Q9C056 277 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-214ENST00000540539 CRTAC1Q9NQ79 661 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 MIOSQ9NXC5 875 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 NSMCE4AQ9NXX6 385 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 PTTG3PQ9NZH4 202 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 SLC9A2Q9UBY0 812 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 AP1M2Q9Y6Q5 423 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 ANKDD1BA6NHY2 528 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 M0R233 179 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 SULT1C2O00338 296 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 MITFO75030 526 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-214ENST00000540539 CABYRO75952 493 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 CYP17A1P05093 508 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 NFICP08651 508 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 CNPP09543 421 aaKnown RBP9.16□□□□□ -0.94
CLIP1-214ENST00000540539 RAP2AP10114 183 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 KDELR1P24390 212 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 YWHAQP27348 245 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 MAPK1P28482 360 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 TGM4P49221 684 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 DEFA5Q01523 94 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 CRYZQ08257 329 aaKnown RBP9.16□□□□□ -0.94
CLIP1-214ENST00000540539 IRF4Q15306 451 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 CHRNA6Q15825 494 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 QRICH1Q2TAL8 776 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 ZNF284Q2VY69 593 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 SPDYE7PQ495Y7 208 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 EFCAB12Q6NXP0 572 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 KANSL1Q7Z3B3 1105 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 RNF130Q86XS8 419 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 MCATQ8IVS2 390 aaKnown RBP9.16□□□□□ -0.94
CLIP1-214ENST00000540539 DCBLD1Q8N8Z6 715 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 OR11H7Q8NGC8 314 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 GLYATL2Q8WU03 294 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 PEX11GQ96HA9 241 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 RIBC2Q9H4K1 309 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 GAREM1Q9H706 876 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 FBRSL1Q9HCM7 1045 aaKnown RBP9.16□□□□□ -0.94
CLIP1-214ENST00000540539 CASS4Q9NQ75 786 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 EXTL2Q9UBQ6 330 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 GHRLQ9UBU3 117 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 BTNL2Q9UIR0 455 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 GPR160Q9UJ42 338 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 SSR3Q9UNL2 185 aa9.16□□□□□ -0.94
CLIP1-214ENST00000540539 A0A096LPI6 279 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 FAM240BA0A1B0GVZ2 78 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 CLDN4O14493 209 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 GP1BAP07359 652 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 ADRB2P07550 413 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 CBR1P16152 277 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 ZNF37AP17032 561 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-214ENST00000540539 EFNA1P20827 205 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-214ENST00000540539 GPX3P22352 226 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 LHCGRP22888 699 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 C21orf33P30042 268 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-214ENST00000540539 SSTR4P31391 388 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 SLC25A11Q02978 314 aaKnown RBP9.15□□□□□ -0.94
CLIP1-214ENST00000540539 MADCAM1Q13477 382 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 TBCEQ15813 527 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-214ENST00000540539 HSDL1Q3SXM5 330 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 ZFP82Q8N141 532 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 STX19Q8N4C7 294 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.15□□□□□ -0.94
CLIP1-214ENST00000540539 DNAJB14Q8TBM8 379 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 CREB3L4Q8TEY5 395 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 POF1BQ8WVV4 589 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 BTN2A2Q8WVV5 523 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 BRI3BPQ8WY22 251 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 MRPS24Q96EL2 167 aaKnown RBP9.15□□□□□ -0.94
CLIP1-214ENST00000540539 PI4K2AQ9BTU6 479 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 PIF1Q9H611 641 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 EVA1AQ9H8M9 152 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 MEAF6Q9HAF1 191 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 TNFRSF12AQ9NP84 129 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 C14orf105Q9NVL8 296 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms