RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	PRMT5	O14744	637 aa	Predicted RBP	11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	TOX	O94900	526 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	NSA2	O95478	260 aa	Known RBP	11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	ATP5D	P30049	168 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	PTGS2	P35354	604 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	BDKRB1	P46663	353 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	TTPA	P49638	278 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	CDH17	Q12864	832 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	MYBPH	Q13203	477 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	ARHGAP19	Q14CB8	494 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	SYT16	Q17RD7	645 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	MINDY4	Q4G0A6	757 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	FASTKD1	Q53R41	847 aa	Known RBP	11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	MFSD4B	Q5TF39	518 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	FCRLB	Q6BAA4	426 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	ZNF425	Q6IV72	752 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	LANCL3	Q6ZV70	420 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	OTOA	Q7RTW8	1153 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	FGD2	Q7Z6J4	655 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	ANKRD37	Q7Z713	158 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	SKA2	Q8WVK7	121 aa	Predicted RBP	11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	SMPDL3A	Q92484	453 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	RND1	Q92730	232 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	RUNDC3B	Q96NL0	473 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	ALPK1	Q96QP1	1244 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	NPAS2	Q99743	824 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	TRIM45	Q9H8W5	580 aa	Predicted RBP	11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	ANAPC5	Q9UJX4	755 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	RNF6	Q9Y252	685 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	NFS1	Q9Y697	457 aa		11.71	□□□□□ -0.53
CAPN1-223	ENST00000533079	IGKV1-8	A0A0C4DH67	115 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	FAM90A27P	A6NNH2	459 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	IQCF5	A8MTL0	148 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	TFEC	O14948	347 aa	Predicted RBP	11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	TJP3	O95049	919 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	FGG	P02679	453 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	TPO	P07202	933 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	RPA3	P35244	121 aa	Predicted RBP	11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	HSD17B2	P37059	387 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	PRAME	P78395	509 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	MAT1A	Q00266	395 aa	Known RBP	11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	MAPKAPK3	Q16644	382 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	CYP1B1	Q16678	543 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	CCSMST1	Q4G0I0	132 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	TSTD2	Q5T7W7	516 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	PTRHD1	Q6GMV3	140 aa	Known RBP	11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	PAPD4	Q6PIY7	484 aa	Known RBP	11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	CEP128	Q6ZU80	1094 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	ACAD11	Q709F0	780 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	MAATS1	Q7Z4T9	603 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	LRRC6	Q86X45	466 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	MARVELD2	Q8N4S9	558 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	KRT35	Q92764	455 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	TMEM125	Q96AQ2	219 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	LPAR4	Q99677	370 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	EBNA1BP2	Q99848	306 aa	Known RBP	11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	LRRC1	Q9BTT6	524 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	ACAT2	Q9BWD1	397 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	OSBPL8	Q9BZF1	889 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	CCM2L	Q9NUG4	571 aa	Predicted RBP	11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	ST6GALNAC2	Q9UJ37	374 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	KLF13	Q9Y2Y9	288 aa	Predicted RBP	11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	HCFC1	P51610	2035 aa		11.7	□□□□□ -0.54
CAPN1-223	ENST00000533079	IGHV3-20	A0A0C4DH32	117 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	GOLGA6L10	A0A0M3HER8	536 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	FAM237B	A0A1B0GVD1	139 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	NKX2-6	A6NCS4	301 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	KLK8	O60259	260 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	PRMT3	O60678	531 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	METTL18	O95568	372 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	RHOXF2B	P0C7M4	288 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	PTGER1	P34995	402 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	CETN2	P41208	172 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	XCR1	P46094	333 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	CYB561	P49447	251 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	ABAT	P80404	500 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	PRDX1	Q06830	199 aa	Known RBP	11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	C2orf54	Q08AI8	447 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	FOXD4	Q12950	439 aa	Predicted RBP	11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	CCDC38	Q502W7	563 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	SEL1L2	Q5TEA6	688 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	ICE2	Q659A1	982 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	ARHGAP11A	Q6P4F7	1023 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	ZNF534	Q76KX8	674 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	BIVM	Q86UB2	503 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	SLC13A5	Q86YT5	568 aa	Predicted RBP	11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	KRT222	Q8N1A0	295 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	MPP5	Q8N3R9	675 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	CPSF7	Q8N684	471 aa	Known RBP	11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	OR9A1P	Q8NGU1	263 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	OR6P1	Q8NGX9	317 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	RHOXF2	Q9BQY4	288 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	FAM114A2	Q9NRY5	505 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	PLSCR2	Q9NRY7	297 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	HOMER3	Q9NSC5	361 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	CATSPERZ	Q9NTU4	200 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	PIH1D1	Q9NWS0	290 aa	Known RBP	11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	DNAJB12	Q9NXW2	375 aa	Known RBP	11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	PCYOX1	Q9UHG3	505 aa		11.69	□□□□□ -0.54
CAPN1-223	ENST00000533079	RPH3A	Q9Y2J0	694 aa	Predicted RBP	11.69	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms