RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ITM2CQ9NQX7 267 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 KIAA1522Q9P206 1035 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 CLCA3PQ9Y6N3 262 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 GXYLT2A0PJZ3 443 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 IL1R1P14778 569 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 HSD11B1P28845 292 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 ERVK-25P63136 954 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 CHRFAM7AQ494W8 412 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 TMEM145Q8NBT3 493 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 DNAJC19Q96DA6 116 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 MYRFLQ96LU7 910 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF416Q9BWM5 594 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 RPS10P5Q9NQ39 176 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 FNIP2Q9P278 1114 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 MYPNQ86TC9 1320 aa10.92□□□□□ -0.66
LIMCH1-217ENST00000512946 A6NHS1 94 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 VSTM5A8MXK1 200 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 UPK1BO75841 260 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 BDNFP23560 247 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 PRKCHP24723 683 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 L1CAMP32004 1257 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 NUDT1P36639 197 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 HSPA7P48741 367 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 RPL7AP62424 266 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 ACTA2P62736 377 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 ACTG2P63267 376 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 NFKB2Q00653 900 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 MC2RQ01718 297 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 HNRNPDQ14103 355 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 TRAM2Q15035 370 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 ATG9BQ674R7 924 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF425Q6IV72 752 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 PYROXD2Q8N2H3 581 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 ARRDC4Q8NCT1 418 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 OR13J1Q8NGT2 312 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 RIPOR3Q96MK2 946 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 ALPK1Q96QP1 1244 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 MGLLQ99685 303 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 MAGIXQ9H6Y5 334 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 AGO3Q9H9G7 860 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 MDFIC2A0A1B0GVS7 189 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 FAM170BA6NMN3 283 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 BHMG1C9JSJ3 638 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 J3QLW9 94 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 EEF1E1O43324 174 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 FGF19O95750 216 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 WDPCPO95876 746 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 INSRRP14616 1297 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF19P17023 458 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 CD34P28906 385 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 CDK6Q00534 326 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 TUSC3Q13454 348 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 PGM5Q15124 567 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 PHYKPLQ8IUZ5 450 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 SPARTQ8N0X7 666 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 OR4K2Q8NGD2 314 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 BRSK1Q8TDC3 778 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 CLIP3Q96DZ5 547 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 KLHL9Q9P2J3 617 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 CDC42BPGQ6DT37 1551 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 MOXD2PA6NHM9 499 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 DIRAS3O95661 229 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 HRGP04196 525 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 HOXB9P17482 250 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 RAB4AP20338 218 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 HTR1EP28566 365 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 SCNN1GP51170 649 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 GRIK4Q16099 956 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 RNASE10Q5GAN6 216 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 NUDT13Q86X67 352 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 METTL21AQ8WXB1 218 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 OR8D1Q8WZ84 308 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 TMEM41AQ96HV5 264 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 SNX18Q96RF0 628 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 IDI2Q9BXS1 227 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 REEP4Q9H6H4 257 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 GPN2Q9H9Y4 310 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 B3GAT2Q9NPZ5 323 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 FZD4Q9ULV1 537 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 PCDHB9Q9Y5E1 797 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF726A6NNF4 738 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 A8MVJ9 347 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 PRSS44E7EML9 344 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 MATN3O15232 486 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 TLX2O43763 284 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 VTNP04004 478 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 SFTPBP07988 381 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 ELFN1P0C7U0 828 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 ENDOUP21128 410 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 NSG1P42857 185 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 NDST2P52849 883 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 RAB31Q13636 194 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 GPR33Q49SQ1 333 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 AGAP6Q5VW22 663 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 TLDC1Q6P9B6 456 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 SLC15A3Q8IY34 581 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 SLC22A15Q8IZD6 547 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 ADAMTS19Q8TE59 1207 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 PMM1Q92871 262 aa10.91□□□□□ -0.66
LIMCH1-217ENST00000512946 NINJ1Q92982 152 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms