RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PARD6BQ9BYG5 372 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 DRC3Q9H069 523 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 MRPL46Q9H2W6 279 aaKnown RBP15.12■□□□□ 0.01
UPF3A-208ENST00000484246 GEMIN8Q9NWZ8 242 aaKnown RBP15.12■□□□□ 0.01
UPF3A-208ENST00000484246 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.12■□□□□ 0.01
UPF3A-208ENST00000484246 NDOR1Q9UHB4 597 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 TNPO3Q9Y5L0 923 aaKnown RBP15.12■□□□□ 0.01
UPF3A-208ENST00000484246 SLC22A7Q9Y694 548 aa15.12■□□□□ 0.01
UPF3A-208ENST00000484246 V9GYY5 206 aaPredicted RBP15.12■□□□□ 0.01
UPF3A-208ENST00000484246 H0YIG0 161 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 FOXS1O43638 330 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 OR1F1O43749 312 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 PRAMEF4O60810 478 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 NSA2O95478 260 aaKnown RBP15.11■□□□□ 0.01
UPF3A-208ENST00000484246 GSTA1P08263 222 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 PIK3CGP48736 1102 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 AGTR2P50052 363 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 RPS18P62269 152 aaKnown RBP15.11■□□□□ 0.01
UPF3A-208ENST00000484246 NFKB2Q00653 900 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 IL10RAQ13651 578 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 PRAMEF9Q5VWM5 478 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 SH2D5Q6ZV89 423 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 RIBC1Q8N443 379 aaPredicted RBP15.11■□□□□ 0.01
UPF3A-208ENST00000484246 TMEM151AQ8N4L1 468 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 AFAP1L2Q8N4X5 818 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 ANKRD53Q8N9V6 530 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 TRPV3Q8NET8 790 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 SLC13A3Q8WWT9 602 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 PTCD3Q96EY7 689 aaKnown RBP15.11■□□□□ 0.01
UPF3A-208ENST00000484246 SPSB2Q99619 263 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 ZNF304Q9HCX3 659 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 ZNF358Q9NW07 568 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 OPTCQ9UBM4 332 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 GPN3Q9UHW5 284 aaPredicted RBP15.11■□□□□ 0.01
UPF3A-208ENST00000484246 POLHQ9Y253 713 aa15.11■□□□□ 0.01
UPF3A-208ENST00000484246 TK2O00142 265 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 CLGNO14967 610 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 H2AFYO75367 372 aaKnown RBP15.1■□□□□ 0.01
UPF3A-208ENST00000484246 WFS1O76024 890 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 GFAPP14136 432 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 VARSP26640 1264 aaKnown RBP15.1■□□□□ 0.01
UPF3A-208ENST00000484246 CYP4F2P78329 520 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 MEF2AQ02078 507 aaPredicted RBP15.1■□□□□ 0.01
UPF3A-208ENST00000484246 RGS1Q08116 209 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 LAPTM5Q13571 262 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 SLBPQ14493 270 aaKnown RBP eCLIP15.1■□□□□ 0.01
UPF3A-208ENST00000484246 NKG7Q16617 165 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 TBR1Q16650 682 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 PFKFB4Q16877 469 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 NIPAL1Q6NVV3 410 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 PCSK4Q6UW60 755 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 TMIGD1Q6UXZ0 262 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 KRT78Q8N1N4 520 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 AMER3Q8N944 861 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 SNX31Q8N9S9 440 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 ESAMQ96AP7 390 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 C1QTNF3Q9BXJ4 246 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 SLC6A16Q9GZN6 736 aa15.1■□□□□ 0.01
UPF3A-208ENST00000484246 E2F3O00716 465 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 ATXN7O15265 892 aaPredicted RBP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 NDUFS4O43181 175 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 CCNT2O60583 730 aaKnown RBP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 UGDHO60701 494 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 SERPINA6P08185 405 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 CYC1P08574 325 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 FURINP09958 794 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 SBK3P0C264 359 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 PRKAR1AP10644 381 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 EPB42P16452 691 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 CD22P20273 847 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 FBLP22087 321 aaKnown RBP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 OR1D4P47884 311 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 SSPNQ14714 243 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 FBXO48Q5FWF7 155 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 PAGE2BQ5JRK9 111 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 MLIPQ5VWP3 458 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 BORAQ6PGQ7 559 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 RAB43Q86YS6 212 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 DTWD1Q8N5C7 304 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 PTGR2Q8N8N7 351 aaPredicted RBP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 KCT2Q8NC54 265 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 EPS8L3Q8TE67 593 aaKnown RBP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 CREB3L4Q8TEY5 395 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 IP6K3Q96PC2 410 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 TMEM109Q9BVC6 243 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 TGIF2Q9GZN2 237 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 RHBGQ9H310 441 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 CLK4Q9HAZ1 481 aaKnown RBP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 C14orf105Q9NVL8 296 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 CPSF2Q9P2I0 782 aaKnown RBP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 CTSFQ9UBX1 484 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 ZNF282Q9UDV7 671 aaPredicted RBP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 LGALS13Q9UHV8 139 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 MRPS2Q9Y399 296 aaKnown RBP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 TSC22D4Q9Y3Q8 395 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 MAP4K5Q9Y4K4 846 aa15.09■□□□□ 0.01
UPF3A-208ENST00000484246 FASNP49327 2511 aaKnown RBP15.09■□□□□ 0.01
UPF3A-208ENST00000484246 SMIM24O75264 130 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms