RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ISLR2Q6UXK2 745 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 LANCL3Q6ZV70 420 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 STRA8Q7Z7C7 330 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 ASPGQ86U10 573 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 AFAP1L2Q8N4X5 818 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 MFSD9Q8NBP5 474 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 GABPB2Q8TAK5 448 aaPredicted RBP13.34□□□□□ -0.27
UPF3A-204ENST00000475218 ZCCHC10Q8TBK6 192 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 BRIX1Q8TDN6 353 aaKnown RBP13.34□□□□□ -0.27
UPF3A-204ENST00000475218 NEIL2Q969S2 332 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 HCN3Q9P1Z3 774 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 MAP10Q9P2G4 905 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 CELSR2Q9HCU4 2923 aa13.34□□□□□ -0.27
UPF3A-204ENST00000475218 IGHV3-20A0A0C4DH32 117 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 E2F3O00716 465 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 GUCA1CO95843 209 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 B3GALT4O96024 378 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 SERPINA7P05543 415 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 HEXBP07686 556 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 ITGAMP11215 1152 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 GLRBP48167 497 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 NDUFA9Q16795 377 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 FHL5Q5TD97 284 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 B3GNTL1Q67FW5 361 aaPredicted RBP13.33□□□□□ -0.28
UPF3A-204ENST00000475218 HIST2H2BCQ6DN03 193 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 CAPN13Q6MZZ7 669 aaPredicted RBP13.33□□□□□ -0.28
UPF3A-204ENST00000475218 PALM2Q8IXS6 379 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 KBTBD2Q8IY47 623 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 OR51Q1Q8NH59 317 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 SLC13A3Q8WWT9 602 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 LMF1Q96S06 567 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 ZFATQ9P243 1243 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 PTGFRNQ9P2B2 879 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 RNF14Q9UBS8 474 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 COPG1Q9Y678 874 aaKnown RBP13.33□□□□□ -0.28
UPF3A-204ENST00000475218 DOPEY1Q5JWR5 2465 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 SCN2AQ99250 2005 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 POLEQ07864 2286 aa13.33□□□□□ -0.28
UPF3A-204ENST00000475218 FAM95CA0A1B0GW59 222 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 NPEPPSL1A6NEC2 478 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 RAD51CO43502 376 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 RDH16O75452 317 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 HIST1H2AGP0C0S8 130 aaPredicted RBP13.32□□□□□ -0.28
UPF3A-204ENST00000475218 GP1BBP13224 206 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 HIST1H2ADP20671 130 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 PAFAH1B1P43034 410 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 AVPR1BP47901 424 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 C18orf21Q32NC0 220 aaPredicted RBP13.32□□□□□ -0.28
UPF3A-204ENST00000475218 ZBED8Q8IZ13 594 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 SIRT6Q8N6T7 355 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 CAMKVQ8NCB2 501 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 SPATA4Q8NEY3 305 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 OR5T3Q8NGG3 340 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 DNAJB14Q8TBM8 379 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 HIST1H2AHQ96KK5 128 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 CYTH2Q99418 400 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 HIST1H2AJQ99878 128 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 HAUS8Q9BT25 410 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 H2AFJQ9BTM1 129 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 AICDAQ9GZX7 198 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 LANCL2Q9NS86 450 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 NAALAD2Q9Y3Q0 740 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 UNC79Q9P2D8 2635 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 TRBC2A0A5B9 178 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 ZNF860A6NHJ4 632 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 C4orf51C9J302 202 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 ZNF500O60304 480 aaPredicted RBP13.32□□□□□ -0.28
UPF3A-204ENST00000475218 AGFG2O95081 481 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 ENO2P09104 434 aaPredicted RBP13.32□□□□□ -0.28
UPF3A-204ENST00000475218 C8orf89P0DMQ9 161 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 SAT1P21673 171 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 VARSP26640 1264 aaKnown RBP13.32□□□□□ -0.28
UPF3A-204ENST00000475218 SSTR1P30872 391 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 TSFMP43897 325 aaKnown RBP13.32□□□□□ -0.28
UPF3A-204ENST00000475218 XCR1P46094 333 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 CCR8P51685 355 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 HYAL2Q12891 473 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 ZNF169Q14929 603 aaPredicted RBP13.32□□□□□ -0.28
UPF3A-204ENST00000475218 TRADDQ15628 312 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 CAPN12Q6ZSI9 719 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 ANKRD53Q8N9V6 530 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 VPS50Q96JG6 964 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 TSNARE1Q96NA8 513 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 ERP44Q9BS26 406 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 DPH5Q9H2P9 285 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 RHOJQ9H4E5 214 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 PLA2G3Q9NZ20 509 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 ERRFI1Q9UJM3 462 aaPredicted RBP13.32□□□□□ -0.28
UPF3A-204ENST00000475218 MTO1Q9Y2Z2 717 aaKnown RBP13.32□□□□□ -0.28
UPF3A-204ENST00000475218 SLC22A7Q9Y694 548 aa13.32□□□□□ -0.28
UPF3A-204ENST00000475218 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.32□□□□□ -0.28
UPF3A-204ENST00000475218 TEX15Q9BXT5 2789 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 WIPF3A6NGB9 483 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 OR1F1O43749 312 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 CXCR2P25025 360 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 SCTRP47872 440 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 RHAGQ02094 409 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 C2orf54Q08AI8 447 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 TSNQ15631 228 aaKnown RBP13.31□□□□□ -0.28
UPF3A-204ENST00000475218 PRR7Q8TB68 274 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms