RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MEF2AQ02078 507 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-209ENST00000474432 MGAT5Q09328 741 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 PDIA2Q13087 525 aaKnown RBP17.56■□□□□ 0.4
COL7A1-209ENST00000474432 ZNF169Q14929 603 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-209ENST00000474432 CATSPEREQ5SY80 951 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 IRAK1BP1Q5VVH5 260 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 CAPN13Q6MZZ7 669 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-209ENST00000474432 ASPGQ86U10 573 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 CTAGE6Q86UF2 777 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 CAMKVQ8NCB2 501 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 ZNF740Q8NDX6 193 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 OR51Q1Q8NH59 317 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 HIST1H2AHQ96KK5 128 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 KRT12Q99456 494 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 HIST1H2AJQ99878 128 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 H2AFJQ9BTM1 129 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 HCN3Q9P1Z3 774 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 SVILO95425 2214 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 WIPF3A6NGB9 483 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 EFCAB8A8MWE9 144 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 CDC7O00311 574 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 E2F3O00716 465 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 PCDH17O14917 1159 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 DNAJB6O75190 326 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 PIAS1O75925 651 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 ZNF460Q14592 562 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 HIST2H2BCQ6DN03 193 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 LANCL3Q6ZV70 420 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 ZGRF1Q86YA3 2104 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 CEP97Q8IW35 865 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 AFAP1L2Q8N4X5 818 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 SIRT6Q8N6T7 355 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 PRR7Q8TB68 274 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 ZCCHC10Q8TBK6 192 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 SSC4DQ8WTU2 575 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 ANKRD49Q8WVL7 239 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 SLC13A3Q8WWT9 602 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 NEIL2Q969S2 332 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 CYTH2Q99418 400 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 HAUS8Q9BT25 410 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 EPS8L2Q9H6S3 715 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 RIC8BQ9NVN3 520 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 PLA2G3Q9NZ20 509 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 PTGFRNQ9P2B2 879 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 RNF14Q9UBS8 474 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 ERRFI1Q9UJM3 462 aaPredicted RBP17.55■□□□□ 0.4
COL7A1-209ENST00000474432 SLC22A7Q9Y694 548 aa17.55■□□□□ 0.4
COL7A1-209ENST00000474432 IGHV3-20A0A0C4DH32 117 aa17.54■□□□□ 0.4
COL7A1-209ENST00000474432 WISP3O95389 354 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-209ENST00000474432 GUCA1CO95843 209 aa17.54■□□□□ 0.4
COL7A1-209ENST00000474432 ENO2P09104 434 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-209ENST00000474432 ITGAMP11215 1152 aa17.54■□□□□ 0.4
COL7A1-209ENST00000474432 TLR1Q15399 786 aa17.54■□□□□ 0.4
COL7A1-209ENST00000474432 B3GNTL1Q67FW5 361 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-209ENST00000474432 RIPOR1Q6ZS17 1223 aa17.54■□□□□ 0.4
COL7A1-209ENST00000474432 STRA8Q7Z7C7 330 aa17.54■□□□□ 0.4
COL7A1-209ENST00000474432 GRHL3Q8TE85 626 aa17.54■□□□□ 0.4
COL7A1-209ENST00000474432 CNDP1Q96KN2 507 aa17.54■□□□□ 0.4
COL7A1-209ENST00000474432 LRRC4CQ9HCJ2 640 aa17.54■□□□□ 0.4
COL7A1-209ENST00000474432 ZFATQ9P243 1243 aa17.54■□□□□ 0.4
COL7A1-209ENST00000474432 NAALAD2Q9Y3Q0 740 aa17.54■□□□□ 0.4
COL7A1-209ENST00000474432 UNC79Q9P2D8 2635 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 FAM95CA0A1B0GW59 222 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 TRBC2A0A5B9 178 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 ANKUB1A6NFN9 424 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 RDH16O75452 317 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 B3GALT4O96024 378 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 C1QAP02745 245 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 C8orf89P0DMQ9 161 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 PAFAH1B1P43034 410 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 XCR1P46094 333 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 CCR8P51685 355 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 RPUSD3Q6P087 351 aaKnown RBP17.53■□□□□ 0.4
COL7A1-209ENST00000474432 OR5T3Q8NGG3 340 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 ANKRD7Q92527 254 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 HAS2Q92819 552 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 TRIM54Q9BYV2 358 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 FAM129AQ9BZQ8 928 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 ANKHQ9HCJ1 492 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 LANCL2Q9NS86 450 aa17.53■□□□□ 0.4
COL7A1-209ENST00000474432 NPEPPSL1A6NEC2 478 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 CXorf49A8MYA2 514 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-209ENST00000474432 OR1F1O43749 312 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 SEC24DO94855 1032 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-209ENST00000474432 LDLRP01130 860 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 CYC1P08574 325 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 SAT1P21673 171 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 SCTRP47872 440 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 TNFSF10P50591 281 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 RHAGQ02094 409 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 HYAL2Q12891 473 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 CDC16Q13042 620 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 ZNF324BQ6AW86 544 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-209ENST00000474432 CPEB2Q7Z5Q1 589 aaKnown RBP17.52■□□□□ 0.4
COL7A1-209ENST00000474432 ANKRD37Q7Z713 158 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 ZBED8Q8IZ13 594 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 ANKRD53Q8N9V6 530 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 ST6GALNAC3Q8NDV1 305 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 FAR1Q8WVX9 515 aa17.52■□□□□ 0.4
COL7A1-209ENST00000474432 SLC5A11Q8WWX8 675 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms