RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 GRB7Q14451 532 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PPP1R3AQ16821 1122 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 KLHL26Q53HC5 615 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 LBHQ53QV2 105 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ESCO2Q56NI9 601 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 DCAF6Q58WW2 860 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF628Q5EBL2 1059 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 RNLSQ5VYX0 342 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 MFSD14CQ5VZR4 134 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 WSCD1Q658N2 575 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM111BQ6SJ93 734 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 KLHL17Q6TDP4 642 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 KIAA1324Q6UXG2 1013 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CYP4Z1Q86W10 505 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ANKRD46Q86W74 232 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 HORMAD1Q86X24 394 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 KLBQ86Z14 1044 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 LINC00346Q8IVM7 164 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 TRIM48Q8IWZ4 208 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CENPSQ8N2Z9 138 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 GPR137CQ8N3F9 429 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC15A4Q8N697 577 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 OR2L5Q8NG80 312 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 OR52E1Q8NGJ3 308 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 OR5H6Q8NGV6 325 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 OR56A3Q8NH54 315 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 TSEN15Q8WW01 171 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 LINC01599Q8WXQ3 324 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 APBB2Q92870 758 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 TMEM143Q96AN5 459 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 EXOSC8Q96B26 276 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 LRIG1Q96JA1 1093 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 HIST1H2AHQ96KK5 128 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 HIST1H2AJQ99878 128 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM213AQ9BRX8 229 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CHST8Q9H2A9 424 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 OR51M1Q9H341 326 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PRO3102Q9H379 93 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 RNPEPQ9H4A4 650 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 MKNK2Q9HBH9 465 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 MYOZ1Q9NP98 299 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 XPNPEP1Q9NQW7 623 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM212BQ9NTI7 297 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 P4HTMQ9NXG6 502 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 NKIRAS1Q9NYS0 192 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ADAM22Q9P0K1 906 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ERVK-18Q9QC07 812 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 NCDNQ9UBB6 729 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 LPAR3Q9UBY5 353 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 BTNL2Q9UIR0 455 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 TMEM59LQ9UK28 342 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 INTS6Q9UL03 887 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 FZD10Q9ULW2 581 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 WASF3Q9UPY6 502 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 INSL6Q9Y581 213 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 MAST3O60307 1309 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 AOX1Q06278 1338 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 A0A1W2PRG6 482 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 OR2AT4A6NND4 320 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 E5RI56 91 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 NPIPA2E9PIF3 369 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 QSOX1O00391 747 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 DPM1O60762 260 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PRKRAO75569 313 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 RHOBTB1O94844 696 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 UNC5CO95185 931 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 AHSA1O95433 338 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 METTL18O95568 372 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 WDPCPO95876 746 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PRKCBP05771 671 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 KLK3P07288 261 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 MMP3P08254 477 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SBK3P0C264 359 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 STAG3L2P0CL84 134 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CBSLP0DN79 551 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PEPDP12955 493 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SDHBP21912 280 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CPT2P23786 658 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PSMB6P28072 239 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 LAP3P28838 519 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 BDKRB2P30411 391 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 MCM7P33993 719 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CBSP35520 551 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CLCN7P51798 805 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PKNOX1P55347 436 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 NME5P56597 212 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PSME3P61289 254 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CDH17Q12864 832 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 OVGP1Q12889 678 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 EPS8Q12929 822 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 BAMBIQ13145 260 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SELENBP1Q13228 472 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM47AQ5JRC9 791 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 DDI2Q5TDH0 399 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SEL1L2Q5TEA6 688 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 LIPJQ5W064 366 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 APOBEC3HQ6NTF7 200 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 TMPRSS7Q7RTY8 843 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM90A1Q86YD7 464 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms