RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 GPR65Q8IYL9 337 aa8.07□□□□□ -1.12
CD44-208ENST00000428726 DPP10Q8N608 796 aa8.07□□□□□ -1.12
CD44-208ENST00000428726 OR7G3Q8NG95 312 aa8.07□□□□□ -1.12
CD44-208ENST00000428726 ZNF707Q96C28 371 aaPredicted RBP8.07□□□□□ -1.12
CD44-208ENST00000428726 MIR1-1HGQ9H1L0 117 aa8.07□□□□□ -1.12
CD44-208ENST00000428726 TMEM245Q9H330 911 aa8.07□□□□□ -1.12
CD44-208ENST00000428726 FANCEQ9HB96 536 aa8.07□□□□□ -1.12
CD44-208ENST00000428726 C8orf4Q9NR00 106 aa8.07□□□□□ -1.12
CD44-208ENST00000428726 DYRK4Q9NR20 520 aa8.07□□□□□ -1.12
CD44-208ENST00000428726 TMEM184CQ9NVA4 438 aa8.07□□□□□ -1.12
CD44-208ENST00000428726 PCDHGA8Q9Y5G5 932 aa8.07□□□□□ -1.12
CD44-208ENST00000428726 PCM1Q15154 2024 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 PNMA8CA0A1B0GUJ8 204 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 PDZK1P1A8MUH7 402 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 ARNTLO00327 626 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 CLCNKAP51800 687 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 POLR2LP62875 67 aaKnown RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 SNRPNP63162 240 aaKnown RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 LSM11P83369 360 aaKnown RBP eCLIP8.06□□□□□ -1.12
CD44-208ENST00000428726 ZNF77Q15935 545 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 FAM98BQ52LJ0 330 aaKnown RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 ZNF805Q5CZA5 627 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 PROSER1Q86XN7 944 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 BTN2A2Q8WVV5 523 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 FGF14Q92915 247 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 EXOSC8Q96B26 276 aaKnown RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 LYSMD1Q96S90 227 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 C9orf16Q9BUW7 83 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 AMBRA1Q9C0C7 1298 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 AASDHPPTQ9NRN7 309 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 PNPLA3Q9NST1 481 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 CHCHD3Q9NX63 227 aaKnown RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 SMPD3Q9NY59 655 aaPredicted RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 VPS29Q9UBQ0 182 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 ZNF106Q9H2Y7 1883 aaKnown RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 APOL3O95236 402 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 FUCA1P04066 466 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 EBLN1P0CF75 366 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 GDI1P31150 447 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 RFX3P48380 749 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 ARSFP54793 590 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 C2orf80Q0P641 193 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 MAD2L1Q13257 205 aaPredicted RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 SHHQ15465 462 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 SMU1Q2TAY7 513 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 RNF165Q6ZSG1 346 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 R3HCC1LQ7Z5L2 792 aaKnown RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 FAM129CQ86XR2 697 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 NPAS3Q8IXF0 933 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 MFSD2AQ8NA29 543 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 ATG16L2Q8NAA4 619 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 OR14C36Q8NHC7 312 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 CCL4L1Q8NHW4 92 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 VANGL1Q8TAA9 524 aaPredicted RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 UBTD2Q8WUN7 234 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 SUSD6Q92537 303 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 GTPBP3Q969Y2 492 aaKnown RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 ECHDC3Q96DC8 303 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 LMLNQ96KR4 655 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 KCNC2Q96PR1 638 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 SLC12A9Q9BXP2 914 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 ANKRD60Q9BZ19 345 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 RDH14Q9HBH5 336 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 EQTNQ9NQ60 294 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 SERHLQ9NQF3 203 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 TRNAU1APQ9NX07 287 aaKnown RBP8.06□□□□□ -1.12
CD44-208ENST00000428726 SNX6Q9UNH7 406 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 SLC8A2Q9UPR5 921 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 WDR37Q9Y2I8 494 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 KIAA1671Q9BY89 1806 aa8.06□□□□□ -1.12
CD44-208ENST00000428726 AGAP14A8MT82 685 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 H3BMQ9 156 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 SLC28A1O00337 649 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 ERAL1O75616 437 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 IGFBP1P08833 259 aaPredicted RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 CBSLP0DN79 551 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 AMD1P17707 334 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 AK4P27144 223 aaPredicted RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 CBSP35520 551 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 FEN1P39748 380 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 IDH2P48735 452 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 KRT33BQ14525 404 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 GALNT18Q6P9A2 607 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 PARM1Q6UWI2 310 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 ARMCX6Q7L4S7 300 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 ZDHHC21Q8IVQ6 265 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 TBC1D21Q8IYX1 336 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 AMER2Q8N7J2 671 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 ZNF548Q8NEK5 533 aaPredicted RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 OR4A15Q8NGL6 344 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 CCDC138Q96M89 665 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 COG8Q96MW5 612 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 QRSL1Q9H0R6 528 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 RLIMQ9NVW2 624 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 THG1LQ9NWX6 298 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 PDP1Q9P0J1 537 aaPredicted RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 IFT80Q9P2H3 777 aaPredicted RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 KLHL42Q9P2K6 505 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 RAB23Q9ULC3 237 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 FZD4Q9ULV1 537 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms