RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NDC1Q9BTX1 674 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 ADAP2Q9NPF8 381 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 PHPT1Q9NRX4 125 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 MED31Q9Y3C7 131 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 FAM170BA6NMN3 283 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 STSP08842 583 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 GNAO1P09471 354 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 ACVR2AP27037 513 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 OR12D2P58182 307 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 SPIN4Q56A73 249 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 DPY19L3Q6ZPD9 716 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 Q8N402 240 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 COX18Q8N8Q8 333 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF599Q96NL3 588 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 J3QLW9 94 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 TOXO94900 526 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 RB1P06400 928 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 ANXA3P12429 323 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF19P17023 458 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 IDSP22304 550 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 FNTBP49356 437 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 C1QTNF8P60827 252 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 PSMA6P60900 246 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 PON2Q15165 354 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF630Q2M218 657 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 VARS2Q5ST30 1063 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 SLC24A5Q71RS6 500 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 TMEM135Q86UB9 458 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 OR5J2Q8NH18 312 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 TSSK6Q9BXA6 273 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 RLN2P04090 185 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 GRK6P43250 576 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 CD97P48960 835 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 SEMA3AQ14563 771 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 HSD17B12Q53GQ0 312 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 HACD2Q6Y1H2 254 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 MYRFLQ96LU7 910 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 BTBD1Q9H0C5 482 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 TAS2R10Q9NYW0 307 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 ANKRD12Q6UB98 2062 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 BCAS1O75363 584 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 KLK1P06870 262 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 GRIA2P42262 883 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 CDKL1Q00532 357 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 TOR1AIP1Q5JTV8 583 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 LCN8Q6JVE9 175 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 BLOC1S3Q6QNY0 202 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF627Q7L945 461 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 OR2L5Q8NG80 312 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 OR2L3Q8NG85 312 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 HTATIP2Q9BUP3 242 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 TMEM39AQ9NV64 488 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 TRBV23OR9-2A0A075B6M9 112 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 GMFGO60234 142 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 MTX2O75431 263 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 DNASE1P24855 282 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 DGKGP49619 791 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 CCL23P55773 120 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 INCA1Q0VD86 236 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 UNC50Q53HI1 259 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 ATG9BQ674R7 924 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 EIF5AL1Q6IS14 154 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 DCDC5Q6ZRR9 648 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 PIWIL3Q7Z3Z3 882 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 TMED4Q7Z7H5 227 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 IGFN1Q86VF2 1251 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 CEP97Q8IW35 865 aa18.94■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF487B1APH4 448 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 OR1I1O60431 355 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 FCER2P06734 321 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 NFE2L1Q14494 772 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 CHRNA6Q15825 494 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 NOL9Q5SY16 702 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 SAMD12Q8N8I0 201 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 AIG1Q9NVV5 245 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 ZDHHC3Q9NYG2 299 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 PCDHGB1Q9Y5G3 927 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 HS3ST4Q9Y661 456 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 ATRNL1Q5VV63 1379 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 ERP29P30040 261 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 GABARAPL2P60520 117 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF33AQ06730 810 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 UBXN11Q5T124 520 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 MBOAT1Q6ZNC8 495 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 CTU1Q7Z7A3 348 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 LINC00471Q8N535 108 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 COQ8AQ8NI60 647 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF382Q96SR6 550 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 FAM129BQ96TA1 746 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 MTMR10Q9NXD2 777 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 UBQLN2Q9UHD9 624 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 ANKRD66B4E2M5 251 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 CHP2O43745 196 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 PTTG1O95997 202 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 HSD17B1P14061 328 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 F8A1P23610 371 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 NPRL3Q12980 569 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 NME4O00746 187 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 VAMP1P23763 118 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 KDELR2P33947 212 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms