RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 ALDH18A1P54886 795 aaKnown RBP12.71□□□□□ -0.37
VPS28-201ENST00000292510 MAT1AQ00266 395 aaKnown RBP12.71□□□□□ -0.37
VPS28-201ENST00000292510 MC1RQ01726 317 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 DOC2AQ14183 400 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 TBR1Q16650 682 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 DEFB109BQ30KR1 87 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 XKR6Q5GH73 641 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 GARNL3Q5VVW2 1013 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 TMEM214Q6NUQ4 689 aaKnown RBP12.71□□□□□ -0.37
VPS28-201ENST00000292510 PCSK4Q6UW60 755 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 SHISA6Q6ZSJ9 500 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 OVCH1Q7RTY7 1134 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 SYVN1Q86TM6 617 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 TDRPQ86YL5 185 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.71□□□□□ -0.376e-7■■■■■ 139.2
VPS28-201ENST00000292510 SHISA5Q8N114 240 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 TEX9Q8N6V9 391 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 PTGR2Q8N8N7 351 aaPredicted RBP12.71□□□□□ -0.37
VPS28-201ENST00000292510 CAMKVQ8NCB2 501 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 TTC9Q92623 222 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 PHF21BQ96EK2 531 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 C17orf62Q9BQA9 187 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 DRC3Q9H069 523 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 ZNF304Q9HCX3 659 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 TMEM216Q9P0N5 145 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 OPTCQ9UBM4 332 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 RAB21Q9UL25 225 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 PTRH2Q9Y3E5 179 aaKnown RBP12.71□□□□□ -0.37
VPS28-201ENST00000292510 TLDC2A0PJX2 215 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 H2AFYO75367 372 aaKnown RBP12.7□□□□□ -0.38
VPS28-201ENST00000292510 B3GALT4O96024 378 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 NUDT17P0C025 328 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 SLC35G6P0C7Q6 338 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 IL1RNP18510 177 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 KRT15P19012 456 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 FBLP22087 321 aaKnown RBP12.7□□□□□ -0.38
VPS28-201ENST00000292510 HNF4AP41235 474 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 CHIT1Q13231 466 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 NDUFA9Q16795 377 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 SYT16Q17RD7 645 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 ADNP2Q6IQ32 1131 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 PRMT9Q6P2P2 845 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 TMIGD1Q6UXZ0 262 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 PRSS58Q8IYP2 241 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 TMEM151AQ8N4L1 468 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 TBC1D19Q8N5T2 526 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 OR9A4Q8NGU2 314 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 MMABQ96EY8 250 aaPredicted RBP12.7□□□□□ -0.38
VPS28-201ENST00000292510 MRPL57Q9BQC6 102 aaKnown RBP12.7□□□□□ -0.38
VPS28-201ENST00000292510 CAPS2Q9BXY5 557 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 MRPL46Q9H2W6 279 aaKnown RBP12.7□□□□□ -0.38
VPS28-201ENST00000292510 SOX17Q9H6I2 414 aaPredicted RBP12.7□□□□□ -0.38
VPS28-201ENST00000292510 ZFP69BQ9UJL9 534 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 ANGPTL3Q9Y5C1 460 aa12.7□□□□□ -0.38
VPS28-201ENST00000292510 SGK494L7N484 410 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 SMIM24O75264 130 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 UMODP07911 640 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 PIM1P11309 404 aaPredicted RBP12.69□□□□□ -0.38
VPS28-201ENST00000292510 EPB42P16452 691 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 EEF1DP29692 281 aaKnown RBP12.69□□□□□ -0.38
VPS28-201ENST00000292510 OTX2P32243 289 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 AHRP35869 848 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 FOLR3P41439 243 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 RHDQ02161 417 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 IRF8Q02556 426 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 IFFO1Q0D2I5 559 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 GTF2H2Q13888 395 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 FAM53BQ14153 422 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 PCBP2Q15366 365 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS28-201ENST00000292510 NKG7Q16617 165 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 UGT8Q16880 541 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 LINC00303Q3SY05 128 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 CRTC2Q53ET0 693 aaPredicted RBP12.69□□□□□ -0.38
VPS28-201ENST00000292510 VWA2Q5GFL6 755 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 GTF2H2CQ6P1K8 395 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 SH2D5Q6ZV89 423 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 RPS27LQ71UM5 84 aaKnown RBP12.69□□□□□ -0.38
VPS28-201ENST00000292510 GOLGA7Q7Z5G4 137 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 PDSS2Q86YH6 399 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 KRT78Q8N1N4 520 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 AMER3Q8N944 861 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 OR2Y1Q8NGV0 311 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 ACMSDQ8TDX5 336 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 ADAMTS17Q8TE56 1095 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 CREB3L4Q8TEY5 395 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 CCT6BQ92526 530 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 FKBP10Q96AY3 582 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 WDR34Q96EX3 536 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 PTCD3Q96EY7 689 aaKnown RBP12.69□□□□□ -0.38
VPS28-201ENST00000292510 BBC3Q96PG8 261 aaPredicted RBP12.69□□□□□ -0.38
VPS28-201ENST00000292510 SPSB2Q99619 263 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 YIPF2Q9BWQ6 316 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 AICDAQ9GZX7 198 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 KLHL31Q9H511 634 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 PPCSQ9HAB8 311 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 ACSS2Q9NR19 701 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 TRPC4Q9UBN4 977 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 ZNF490Q9ULM2 529 aaPredicted RBP12.69□□□□□ -0.38
VPS28-201ENST00000292510 CDC14AQ9UNH5 594 aa12.69□□□□□ -0.38
VPS28-201ENST00000292510 PADI2Q9Y2J8 665 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms