RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CPNE7Q9UBL6 633 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 LOXL2Q9Y4K0 774 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PMF1-BGLAPU3KQ54 211 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PIRO00625 290 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 AIM2O14862 343 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PRODHO43272 600 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TSPAN12O95859 305 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PAHP00439 452 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CYP4B1P13584 511 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ITGA2P17301 1181 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PDE7AQ13946 482 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF311Q5JNZ3 666 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TMEM110Q86TL2 294 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ASPGQ86U10 573 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 NAXDQ8IW45 347 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 AGGF1Q8N302 714 aaeCLIP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 OR52K2Q8NGK3 314 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 OR1N1Q8NGS0 311 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ZDHHC16Q969W1 377 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PANX1Q96RD7 426 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ACTRT3Q9BYD9 372 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 GBA3Q9H227 469 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 FAIMQ9NVQ4 179 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PDP2Q9P2J9 529 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 MARCOQ9UEW3 520 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 DLG5Q8TDM6 1919 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 hCG_1809904A0A1W2PP81 198 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 A0A1W2PPE2 198 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 A0A1W2PR64 198 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 A0A1W2PRV1 198 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 MASP2O00187 686 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TRIM38O00635 465 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 BCAS2O75934 225 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ATP5F1P24539 256 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 GDF1P27539 372 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 MNDAP41218 407 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 NOMO3P69849 1222 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ACVR1CQ8NER5 493 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 OR4C15Q8NGM1 316 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 OR8K5Q8NH50 307 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 KCTD4Q8WVF5 259 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 Q96MT0 163 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PSKH2Q96QS6 385 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TRMOQ9BU70 441 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 MED18Q9BUE0 208 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ETNK1Q9HBU6 452 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 EXOSC4Q9NPD3 245 aaKnown RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 FKBPLQ9UIM3 349 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 A0A1W2PQ72 361 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 GABRR3A8MPY1 467 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 UGT1A9O60656 530 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TRBC1P01850 177 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 UGT1A6P19224 532 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 MMP8P22894 467 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 SLC6A9P48067 706 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CDK7P50613 346 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 MCCD1P59942 119 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 SCRN3Q0VDG4 424 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PTPN20Q4JDL3 420 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 LACTB2Q53H82 288 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CES4AQ5XG92 561 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 UNC5DQ6UXZ4 953 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 DNAJC14Q6Y2X3 702 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 KANSL1Q7Z3B3 1105 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 KBTBD2Q8IY47 623 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 MICU2Q8IYU8 434 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 GSTCDQ8NEC7 633 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 OR9K2Q8NGE7 335 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 OR4A15Q8NGL6 344 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TRMT10AQ8TBZ6 339 aaKnown RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ATG4AQ8WYN0 398 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 DHRS1Q96LJ7 313 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 NDNQ99608 321 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 UGT1A7Q9HAW7 530 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 UGT1A10Q9HAW8 530 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 UGT1A8Q9HAW9 530 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TMEM184CQ9NVA4 438 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PLAAQ9Y263 795 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 YBX2Q9Y2T7 364 aaKnown RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PHIPQ8WWQ0 1821 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 NAV1Q8NEY1 1877 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 VSTM2BA6NLU5 285 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 NPIPA5E9PKD4 350 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 M0R129 80 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 KRT34O76011 436 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 STARP49675 285 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 PLCXD2Q0VAA5 305 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ZBTB6Q15916 424 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 KHDC1LQ5JSQ8 128 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ZC3HC1Q86WB0 502 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 CPXM2Q8N436 756 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ARFGAP1Q8N6T3 406 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 PTGR2Q8N8N7 351 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 SETD9Q8NE22 299 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 TRMT61AQ96FX7 289 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 MAGEB18Q96M61 343 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 CHID1Q9BWS9 393 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 TRPV4Q9HBA0 871 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 LYARQ9NX58 379 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 TAAR2Q9P1P5 351 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms