RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 USP10Q14694 798 aaKnown RBP13.62□□□□□ -0.23
CLN3-249ENST00000636685 DAZAP2Q15038 168 aaPredicted RBP13.62□□□□□ -0.23
CLN3-249ENST00000636685 Q5PR19 223 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 KAZNQ674X7 775 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 OR51Q1Q8NH59 317 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 SPATA13Q96N96 652 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 QKIQ96PU8 341 aaKnown RBP eCLIP13.62□□□□□ -0.23
CLN3-249ENST00000636685 LPAR4Q99677 370 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 PACSIN1Q9BY11 444 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 HCN3Q9P1Z3 774 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 TRPS1Q9UHF7 1281 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 ARHGEF33A8MVX0 844 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 CMPK1P30085 196 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 XCR1P46094 333 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 MLF1P58340 268 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 SLC26A5P58743 744 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 PTK6Q13882 451 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 FAM53BQ14153 422 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 TFDP2Q14188 446 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 ODF2Q5BJF6 829 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 PRSS41Q7RTY9 318 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 PAQR7Q86WK9 346 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 CXorf67Q86X51 503 aaPredicted RBP13.61□□□□□ -0.23
CLN3-249ENST00000636685 ZFP62Q8NB50 900 aaPredicted RBP13.61□□□□□ -0.23
CLN3-249ENST00000636685 HMGCLL1Q8TB92 370 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 ELP5Q8TE02 316 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 RAD51AP1Q96B01 352 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 OR2A5Q96R48 311 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 TBL1YQ9BQ87 522 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 SARGQ9BW04 601 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 ATG10Q9H0Y0 220 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 NFS1Q9Y697 457 aa13.61□□□□□ -0.23
CLN3-249ENST00000636685 BZW2Q9Y6E2 419 aaKnown RBP13.61□□□□□ -0.23
CLN3-249ENST00000636685 IGKV1-8A0A0C4DH67 115 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 IQCF5A8MTL0 148 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 SYT5O00445 386 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 CDK2AP1O14519 115 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 ARHGEF9O43307 516 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 TPH1P17752 444 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 MSNP26038 577 aaKnown RBP13.6□□□□□ -0.23
CLN3-249ENST00000636685 RBL1P28749 1068 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 TRHRP34981 398 aaPredicted RBP13.6□□□□□ -0.23
CLN3-249ENST00000636685 PEX19P40855 299 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 CDKN2BP42772 138 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 ABRAXAS2Q15018 415 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 ITPRIPL1Q6GPH6 555 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 TTC23LQ6PF05 361 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 PAOXQ6QHF9 649 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 C16orf47Q6ZP98 133 aaPredicted RBP13.6□□□□□ -0.23
CLN3-249ENST00000636685 ASZ1Q8WWH4 475 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 P3H4Q92791 437 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 TSLPQ969D9 159 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 RERGQ96A58 199 aaPredicted RBP13.6□□□□□ -0.23
CLN3-249ENST00000636685 Q96MF0 132 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 MRPS30Q9NP92 439 aaKnown RBP13.6□□□□□ -0.23
CLN3-249ENST00000636685 LCMT1Q9UIC8 334 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 NENFQ9UMX5 172 aa13.6□□□□□ -0.23
CLN3-249ENST00000636685 RUVBL2Q9Y230 463 aaKnown RBP13.6□□□□□ -0.23
CLN3-249ENST00000636685 AAR2Q9Y312 384 aaKnown RBP13.6□□□□□ -0.23
CLN3-249ENST00000636685 FIGNL2A6NMB9 653 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 FAM166BA8MTA8 275 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 H0YIG0 161 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 SLC16A5O15375 505 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 C1orf105O95561 183 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 SERPING1P05155 500 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 H2AFZP0C0S5 128 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 TACR1P25103 407 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 FOXN2P32314 431 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 NAA25Q14CX7 972 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 NSDHLQ15738 373 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 NDUFA9Q16795 377 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 H2AFVQ71UI9 128 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 MDGA2Q7Z553 956 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 P3H2Q8IVL5 708 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 CCDC50Q8IVM0 306 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 RAB42Q8N4Z0 105 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 SMC6Q96SB8 1091 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 RBCK1Q9BYM8 510 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 ARNT2Q9HBZ2 717 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 CHMP5Q9NZZ3 219 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 PCYOX1Q9UHG3 505 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 TTC7AQ9ULT0 858 aaPredicted RBP13.59□□□□□ -0.23
CLN3-249ENST00000636685 LIPGQ9Y5X9 500 aa13.59□□□□□ -0.23
CLN3-249ENST00000636685 ANK2Q01484 3957 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 CCDC162PA2VCL2 907 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 PINLYPA6NC86 204 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 TRIM64A6NGJ6 449 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 TRIM64BA6NI03 449 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 HACD1B0YJ81 288 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 SGK494L7N484 410 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 TXNDC9O14530 226 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 PHF2O75151 1096 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 CDC123O75794 336 aaPredicted RBP13.58□□□□□ -0.24
CLN3-249ENST00000636685 APOA4P06727 396 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 AOAHP28039 575 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 OR4D2P58180 307 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 PPIAP62937 165 aaKnown RBP13.58□□□□□ -0.24
CLN3-249ENST00000636685 RHAGQ02094 409 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 PRPSAP1Q14558 356 aa13.58□□□□□ -0.24
CLN3-249ENST00000636685 POU6F1Q14863 301 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms