RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	OR52E4	Q8NGH9	312 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	OR5AR1	Q8NGP9	310 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	RMND5B	Q96G75	393 aa	Predicted RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	C12orf66	Q96MD2	445 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	INSM2	Q96T92	566 aa	Predicted RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	SLC29A1	Q99808	456 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	SEMA6A	Q9H2E6	1030 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	IPPK	Q9H8X2	491 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	PRDM8	Q9NQV8	689 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	OLAH	Q9NV23	265 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	STOX2	Q9P2F5	926 aa	Predicted RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	PCOLCE2	Q9UKZ9	415 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	TIMM22	Q9Y584	194 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	PCDHB3	Q9Y5E6	796 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	HEBP2	Q9Y5Z4	205 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	CFAP20	Q9Y6A4	193 aa	Known RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	CACNA1I	Q9P0X4	2223 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	LSM1	O15116	133 aa	Known RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	OR4F21	O95013	312 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	WNT1	P04628	370 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	AK4	P27144	223 aa	Predicted RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	IMPA1	P29218	277 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	PRDX3	P30048	256 aa	Known RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	TTK	P33981	857 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	HSD17B2	P37059	387 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	LIPE	Q05469	1076 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	KRT33B	Q14525	404 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	ZXDC	Q2QGD7	858 aa	Predicted RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	NANOGP8	Q6NSW7	305 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	LETMD1	Q6P1Q0	360 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	IYD	Q6PHW0	289 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	AMIGO2	Q86SJ2	522 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	SPPL2C	Q8IUH8	684 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	KIAA2013	Q8IYS2	634 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	PHACTR4	Q8IZ21	702 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	FAM9C	Q8IZT9	166 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	METTL25	Q8N6Q8	603 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	FNDC5	Q8NAU1	212 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	OR2T11	Q8NH01	316 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	METTL6	Q8TCB7	284 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	GPBAR1	Q8TDU6	330 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	GAB3	Q8WWW8	586 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	CCDC115	Q96NT0	180 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	FERD3L	Q96RJ6	166 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	NTMT1	Q9BV86	223 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	GSDMC	Q9BYG8	508 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	ATG10	Q9H0Y0	220 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	MVB12B	Q9H7P6	319 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	NANOG	Q9H9S0	305 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	IMP3	Q9NV31	184 aa	Known RBP	11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	TBC1D29	Q9UFV1	150 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	ANAPC2	Q9UJX6	822 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	FBXO4	Q9UKT5	387 aa		11.28	□□□□□ -0.6
VRK3-223	ENST00000601341	ZDBF2	Q9HCK1	2354 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	KRT87P	A6NCN2	255 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	SLC28A1	O00337	649 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	SOCS2	O14508	198 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	ANKRD28	O15084	1053 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	BCAT2	O15382	392 aa	Predicted RBP	11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	CTSE	P14091	401 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	ARL1	P40616	181 aa	Predicted RBP	11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	AFF3	P51826	1226 aa	Known RBP	11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	UFM1	P61960	85 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	NAE1	Q13564	534 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	ARHGAP19	Q14CB8	494 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	CLCA4	Q14CN2	919 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	RPE65	Q16518	533 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	CYP51A1	Q16850	503 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	SLC36A3	Q495N2	470 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	ZNF542P	Q5EBM4	170 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	RBM44	Q6ZP01	1051 aa	Known RBP	11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	ARMCX6	Q7L4S7	300 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	TRIM46	Q7Z4K8	759 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	BMP8A	Q7Z5Y6	402 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	SYTL1	Q8IYJ3	562 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	RAB42	Q8N4Z0	105 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	FBXL6	Q8N531	539 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	CDYL2	Q8N8U2	506 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	SNX31	Q8N9S9	440 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	OR56A3	Q8NH54	315 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	CCL4L1	Q8NHW4	92 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	ZFP28	Q8NHY6	868 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	ZNF480	Q8WV37	535 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	PYCR2	Q96C36	320 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	SH3GL1	Q99961	368 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	BDH2	Q9BUT1	245 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	SLC29A3	Q9BZD2	475 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	TIMMDC1	Q9NPL8	285 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	DNAJC11	Q9NVH1	559 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	CIDEB	Q9UHD4	219 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	TRPS1	Q9UHF7	1281 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	KLF15	Q9UIH9	416 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	SLC22A14	Q9Y267	594 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	TDRKH	Q9Y2W6	561 aa	Known RBP	11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	COLEC10	Q9Y6Z7	277 aa		11.27	□□□□□ -0.61
VRK3-223	ENST00000601341	TTC28	Q96AY4	2481 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341		A0A087WXM4	84 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	OR52A4P	A6NMU1	304 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341		H0YAE9	185 aa		11.26	□□□□□ -0.61
VRK3-223	ENST00000601341	PDLIM1	O00151	329 aa		11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms