RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 HOXC8P31273 242 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 KCNJ10P78508 379 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 GPR19Q15760 415 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 AGKQ53H12 422 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 PRAMEF19Q5SWL8 479 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 GLCCI1Q86VQ1 547 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 PAQR7Q86WK9 346 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 CIR1Q86X95 450 aaPredicted RBP10.51□□□□□ -0.73
CLK3-226ENST00000569406 NLGN4YQ8NFZ3 816 aaPredicted RBP10.51□□□□□ -0.73
CLK3-226ENST00000569406 SETD6Q8TBK2 473 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 CCDC126Q96EE4 140 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 ACOX2Q99424 681 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 SNRNP25Q9BV90 132 aaKnown RBP10.51□□□□□ -0.73
CLK3-226ENST00000569406 NT5C1AQ9BXI3 368 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 FAM49BQ9NUQ9 324 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 FBXL2Q9UKC9 423 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 CDYLQ9Y232 598 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 F7P08709 466 aaPredicted RBP10.51□□□□□ -0.73
CLK3-226ENST00000569406 ITGB8P26012 769 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 FMO3P31513 532 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 PRMT2P55345 433 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 MAZP56270 477 aaKnown RBP10.51□□□□□ -0.73
CLK3-226ENST00000569406 SCN1BQ07699 218 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 C9orf57Q5W0N0 161 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 NAPRTQ6XQN6 538 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 PAQR9Q6ZVX9 377 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 CRYBG2Q8N1P7 616 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 ZNF248Q8NDW4 579 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 SLC45A3Q96JT2 553 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 MEGF10Q96KG7 1140 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 PARK7Q99497 189 aaKnown RBP10.51□□□□□ -0.73
CLK3-226ENST00000569406 MRASO14807 208 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 VEGFDO43915 354 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 GSRP00390 522 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 CHRNGP07510 517 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 NRIP1P48552 1158 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 XKP51811 444 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 PSMD4P55036 377 aaKnown RBP10.51□□□□□ -0.73
CLK3-226ENST00000569406 RAC1P63000 192 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 PITX1P78337 314 aaPredicted RBP10.51□□□□□ -0.73
CLK3-226ENST00000569406 MEF2AQ02078 507 aaPredicted RBP10.51□□□□□ -0.73
CLK3-226ENST00000569406 ZNF284Q2VY69 593 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 OR2B11Q5JQS5 317 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 ANKS6Q68DC2 871 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 SLC27A4Q6P1M0 643 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 C11orf65Q8NCR3 313 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 KBTBD8Q8NFY9 601 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 OR1M1Q8NGA1 313 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 POC1BQ8TC44 478 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 C19orf60Q96EN9 201 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 RBCK1Q9BYM8 510 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 GOLGA2P5Q9HBQ8 144 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 POPDC2Q9HBU9 364 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 TMEM30AQ9NV96 361 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 ZNF358Q9NW07 568 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 ZNF222Q9UK12 451 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 MAB21L2Q9Y586 359 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 OR6C74A6NCV1 312 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 HAS3O00219 553 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 CBX4O00257 560 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 DCLK1O15075 740 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 SCAMP1O15126 338 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 NOBOXO60393 691 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 CELF2O95319 508 aaKnown RBP10.5□□□□□ -0.73
CLK3-226ENST00000569406 AKAP5P24588 427 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 YWHAZP63104 245 aaKnown RBP10.5□□□□□ -0.73
CLK3-226ENST00000569406 SLC6A3Q01959 620 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 VEPH1Q14D04 833 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 PPA1Q15181 289 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 MAPKAPK3Q16644 382 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 ARTNQ5T4W7 220 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 TTC23Q5W5X9 447 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 USP53Q70EK8 1073 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 RAB11FIP2Q7L804 512 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 WDSUB1Q8N9V3 476 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 RHOVQ96L33 236 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 GPR137Q96N19 417 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 SLC2A13Q96QE2 648 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 TINF2Q9BSI4 451 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 C11orf54Q9H0W9 315 aaPredicted RBP10.5□□□□□ -0.73
CLK3-226ENST00000569406 MBD1Q9UIS9 605 aaPredicted RBP10.5□□□□□ -0.73
CLK3-226ENST00000569406 EMCNQ9ULC0 261 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 PTCH2Q9Y6C5 1203 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 SLC28A1O00337 649 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 ZNF197O14709 1029 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 MYL12BO14950 172 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 CFDP00746 253 aaPredicted RBP10.5□□□□□ -0.73
CLK3-226ENST00000569406 ALPPP05187 535 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 MYL12AP19105 171 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 ARSFP54793 590 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 GABARAPL2P60520 117 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 RPS7P62081 194 aaKnown RBP10.5□□□□□ -0.73
CLK3-226ENST00000569406 BEX3Q00994 111 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 PDK2Q15119 407 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 IRF4Q15306 451 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 GPR158Q5T848 1215 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 ARHGAP17Q68EM7 881 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 REP15Q6BDI9 236 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 TMEM88Q6PEY1 159 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 CLEC2AQ6UVW9 174 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms