RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 HYOU1Q9Y4L1 999 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 FAM215AQ9Y5M1 114 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 NFS1Q9Y697 457 aa11.03□□□□□ -0.64
CLK3-222ENST00000568232 IGKV1-8A0A0C4DH67 115 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 GPR37O15354 613 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 ACVR2AP27037 513 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 TAS2R50P59544 299 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 COPS2P61201 443 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 PPP2R2BQ00005 443 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 ACTN3Q08043 901 aaPredicted RBP11.02□□□□□ -0.65
CLK3-222ENST00000568232 ODF2Q5BJF6 829 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 GARNL3Q5VVW2 1013 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 FBXW10Q5XX13 1052 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 RTL6Q6ICC9 239 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 ZNF585AQ6P3V2 769 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 OR51Q1Q8NH59 317 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 SLCO2A1Q92959 643 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 TMEM125Q96AQ2 219 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 RAD51AP1Q96B01 352 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 NAP1L5Q96NT1 182 aaPredicted RBP11.02□□□□□ -0.65
CLK3-222ENST00000568232 OR2A5Q96R48 311 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 TBL1YQ9BQ87 522 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 PLCD4Q9BRC7 762 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 RAB11FIP5Q9BXF6 653 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 PLEKHF2Q9H8W4 249 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 HCN3Q9P1Z3 774 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 NENFQ9UMX5 172 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 BZW2Q9Y6E2 419 aaKnown RBP11.02□□□□□ -0.65
CLK3-222ENST00000568232 SCN2AQ99250 2005 aa11.02□□□□□ -0.65
CLK3-222ENST00000568232 ARHGEF33A8MVX0 844 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 KLRC4-KLRK1H3BQV0 150 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 SLC16A5O15375 505 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 VPS26AO75436 327 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 C1orf105O95561 183 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 SERPING1P05155 500 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 H2AFZP0C0S5 128 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 CD53P19397 219 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 MSNP26038 577 aaKnown RBP11.01□□□□□ -0.65
CLK3-222ENST00000568232 CMPK1P30085 196 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 XCR1P46094 333 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 AVPR1BP47901 424 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 AGTR2P50052 363 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 SLC26A5P58743 744 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 DCAF7P61962 342 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 TFDP2Q14188 446 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 USP10Q14694 798 aaKnown RBP11.01□□□□□ -0.65
CLK3-222ENST00000568232 PCBP2Q15366 365 aaKnown RBP eCLIP11.01□□□□□ -0.65
CLK3-222ENST00000568232 FLYWCH1Q4VC44 716 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 SUSD1Q6UWL2 747 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 H2AFVQ71UI9 128 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 PAQR7Q86WK9 346 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 PLD3Q8IV08 490 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 PHC2Q8IXK0 858 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 LGI4Q8N135 537 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 KRT222Q8N1A0 295 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 ZFP62Q8NB50 900 aaPredicted RBP11.01□□□□□ -0.65
CLK3-222ENST00000568232 ARMC2Q8NEN0 867 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 ELP5Q8TE02 316 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 ASZ1Q8WWH4 475 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 SPATA13Q96N96 652 aa11.01□□□□□ -0.65
CLK3-222ENST00000568232 TRIM45Q9H8W5 580 aaPredicted RBP11.01□□□□□ -0.65
CLK3-222ENST00000568232 PIH1D1Q9NWS0 290 aaKnown RBP11.01□□□□□ -0.65
CLK3-222ENST00000568232 TTC7AQ9ULT0 858 aaPredicted RBP11.01□□□□□ -0.65
CLK3-222ENST00000568232 R3HDM2Q9Y2K5 976 aaKnown RBP11.01□□□□□ -0.65
CLK3-222ENST00000568232 KLF13Q9Y2Y9 288 aaPredicted RBP11.01□□□□□ -0.65
CLK3-222ENST00000568232 AAR2Q9Y312 384 aaKnown RBP11.01□□□□□ -0.65
CLK3-222ENST00000568232 CCDC162PA2VCL2 907 aa11□□□□□ -0.65
CLK3-222ENST00000568232 RNF212BA8MTL3 300 aa11□□□□□ -0.65
CLK3-222ENST00000568232 CDC123O75794 336 aaPredicted RBP11□□□□□ -0.65
CLK3-222ENST00000568232 FOXN2P32314 431 aa11□□□□□ -0.65
CLK3-222ENST00000568232 HLCSP50747 726 aa11□□□□□ -0.65
CLK3-222ENST00000568232 MLF1P58340 268 aa11□□□□□ -0.65
CLK3-222ENST00000568232 PTK6Q13882 451 aa11□□□□□ -0.65
CLK3-222ENST00000568232 FAM53BQ14153 422 aa11□□□□□ -0.65
CLK3-222ENST00000568232 POU6F1Q14863 301 aa11□□□□□ -0.65
CLK3-222ENST00000568232 ABRAXAS2Q15018 415 aa11□□□□□ -0.65
CLK3-222ENST00000568232 NSDHLQ15738 373 aa11□□□□□ -0.65
CLK3-222ENST00000568232 SLC25A35Q3KQZ1 300 aa11□□□□□ -0.65
CLK3-222ENST00000568232 ANKRD20A2Q5SQ80 823 aa11□□□□□ -0.65
CLK3-222ENST00000568232 ANKRD20A1Q5TYW2 823 aa11□□□□□ -0.65
CLK3-222ENST00000568232 ANKRD20A3Q5VUR7 823 aa11□□□□□ -0.65
CLK3-222ENST00000568232 SHEQ5VZ18 495 aa11□□□□□ -0.65
CLK3-222ENST00000568232 ITPRIPL1Q6GPH6 555 aa11□□□□□ -0.65
CLK3-222ENST00000568232 TTC23LQ6PF05 361 aa11□□□□□ -0.65
CLK3-222ENST00000568232 B3GNT6Q6ZMB0 384 aa11□□□□□ -0.65
CLK3-222ENST00000568232 MDGA2Q7Z553 956 aa11□□□□□ -0.65
CLK3-222ENST00000568232 HMGCLL1Q8TB92 370 aa11□□□□□ -0.65
CLK3-222ENST00000568232 SLC35G2Q8TBE7 412 aa11□□□□□ -0.65
CLK3-222ENST00000568232 FAM222BQ8WU58 562 aa11□□□□□ -0.65
CLK3-222ENST00000568232 CTNNBL1Q8WYA6 563 aaPredicted RBP11□□□□□ -0.65
CLK3-222ENST00000568232 TSLPQ969D9 159 aa11□□□□□ -0.65
CLK3-222ENST00000568232 RERGQ96A58 199 aaPredicted RBP11□□□□□ -0.65
CLK3-222ENST00000568232 LPAR4Q99677 370 aa11□□□□□ -0.65
CLK3-222ENST00000568232 MACROD1Q9BQ69 325 aa11□□□□□ -0.65
CLK3-222ENST00000568232 RBCK1Q9BYM8 510 aa11□□□□□ -0.65
CLK3-222ENST00000568232 ATG10Q9H0Y0 220 aa11□□□□□ -0.65
CLK3-222ENST00000568232 ARNT2Q9HBZ2 717 aa11□□□□□ -0.65
CLK3-222ENST00000568232 MRPS30Q9NP92 439 aaKnown RBP11□□□□□ -0.65
CLK3-222ENST00000568232 CHMP5Q9NZZ3 219 aa11□□□□□ -0.65
CLK3-222ENST00000568232 LCMT1Q9UIC8 334 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms