RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TEKT2Q9UIF3 430 aa15.94■□□□□ 0.14
CLN3-211ENST00000564091 AKAP9Q99996 3911 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 H0YIG0 161 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 SGK494L7N484 410 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 NSA2O95478 260 aaKnown RBP15.93■□□□□ 0.14
CLN3-211ENST00000564091 SNRPB2P08579 225 aaKnown RBP15.93■□□□□ 0.14
CLN3-211ENST00000564091 IL1RNP18510 177 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 CDC25BP30305 580 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 CXCR5P32302 372 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 SKIV2L2P42285 1042 aaKnown RBP15.93■□□□□ 0.14
CLN3-211ENST00000564091 CA7P43166 264 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 MAGEA6P43360 314 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 XCR1P46094 333 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 ZNF766Q5HY98 468 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 UBE2R2Q712K3 238 aaPredicted RBP15.93■□□□□ 0.14
CLN3-211ENST00000564091 CPNE9Q8IYJ1 553 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 BEST3Q8N1M1 668 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 OR51Q1Q8NH59 317 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 KCNJ9Q92806 393 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 MOCOSQ96EN8 888 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 CCDC68Q9H2F9 335 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 LZTFL1Q9NQ48 299 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 TMEM184CQ9NVA4 438 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 SAMD15Q9P1V8 674 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 KLHL42Q9P2K6 505 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 DHRS7Q9Y394 339 aa15.93■□□□□ 0.14
CLN3-211ENST00000564091 KLF2Q9Y5W3 355 aaPredicted RBP15.93■□□□□ 0.14
CLN3-211ENST00000564091 KCNE1BA0A087WTH5 132 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 ZCWPW2A0A1B0GU75 182 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 FAM237BA0A1B0GVD1 139 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 SDR42E2A6NKP2 422 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 GOLGA8MH3BSY2 632 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 KIF5CO60282 957 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 MYBL2P10244 700 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 ENO3P13929 434 aaPredicted RBP15.92■□□□□ 0.14
CLN3-211ENST00000564091 POU3F2P20265 443 aaPredicted RBP15.92■□□□□ 0.14
CLN3-211ENST00000564091 HTR1EP28566 365 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 BCL6P41182 706 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 SLC1A2P43004 574 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 CSNK1G2P78368 415 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 LONRF1Q17RB8 773 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 ACER2Q5QJU3 275 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 PLAG1Q6DJT9 500 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 ANKRD37Q7Z713 158 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 ZNF808Q8N4W9 903 aaPredicted RBP15.92■□□□□ 0.14
CLN3-211ENST00000564091 ZCCHC10Q8TBK6 192 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 CD200R1Q8TD46 325 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 MCOLN3Q8TDD5 553 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 CCDC138Q96M89 665 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 PHF12Q96QT6 1004 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 HES7Q9BYE0 225 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 RUBCNLQ9H714 662 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 ANKRD10Q9NXR5 420 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 C19orf25Q9UFG5 118 aaPredicted RBP15.92■□□□□ 0.14
CLN3-211ENST00000564091 SH2B3Q9UQQ2 575 aa15.92■□□□□ 0.14
CLN3-211ENST00000564091 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.91■□□□□ 0.14
CLN3-211ENST00000564091 FEZF1A0PJY2 475 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 MAGEB16A2A368 324 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 FAM227AF5H4B4 570 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 MAN1A2O60476 641 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 SLC19A2O60779 497 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 KRT14P02533 472 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 COILP38432 576 aaPredicted RBP15.91■□□□□ 0.14
CLN3-211ENST00000564091 RPS15AP62244 130 aaKnown RBP15.91■□□□□ 0.14
CLN3-211ENST00000564091 TBPL1P62380 186 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 MPP1Q00013 466 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 RBPJQ06330 500 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 C3AR1Q16581 482 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 TMEM214Q6NUQ4 689 aaKnown RBP15.91■□□□□ 0.14
CLN3-211ENST00000564091 TTC27Q6P3X3 843 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 BNC2Q6ZN30 1099 aaPredicted RBP15.91■□□□□ 0.14
CLN3-211ENST00000564091 AGGF1Q8N302 714 aaeCLIP15.91■□□□□ 0.14
CLN3-211ENST00000564091 KCT2Q8NC54 265 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 ALKBH8Q96BT7 664 aaKnown RBP15.91■□□□□ 0.14
CLN3-211ENST00000564091 ZNF354BQ96LW1 612 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 SIGLEC12Q96PQ1 595 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 NPAS2Q99743 824 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 RBCK1Q9BYM8 510 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 KCNK13Q9HB14 408 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 CCDC177Q9NQR7 707 aaPredicted RBP15.91■□□□□ 0.14
CLN3-211ENST00000564091 KLHL1Q9NR64 748 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 HOMER3Q9NSC5 361 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 C20orf96Q9NUD7 363 aaPredicted RBP15.91■□□□□ 0.14
CLN3-211ENST00000564091 ADAMTS6Q9UKP5 1117 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 MYO7BQ6PIF6 2116 aa15.91■□□□□ 0.14
CLN3-211ENST00000564091 LCMT2O60294 686 aaKnown RBP15.9■□□□□ 0.14
CLN3-211ENST00000564091 RDH16O75452 317 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 CDC123O75794 336 aaPredicted RBP15.9■□□□□ 0.14
CLN3-211ENST00000564091 HAUS5O94927 633 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 HRH2P25021 359 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 CD96P40200 585 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 TUBA3CQ13748 450 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 PTK6Q13882 451 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 ZNF630Q2M218 657 aaPredicted RBP15.9■□□□□ 0.14
CLN3-211ENST00000564091 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.9■□□□□ 0.14
CLN3-211ENST00000564091 ARMC3Q5W041 872 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 SPINK14Q6IE38 97 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 H3F3CQ6NXT2 135 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 TUBA3EQ6PEY2 450 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 RPTNQ6XPR3 784 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms