RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GRIA3P42263 894 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 GSK3BP49841 420 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 GTF2A1P52655 376 aaPredicted RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 SEC13P55735 322 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 RPS15AP62244 130 aaKnown RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 HMGCS1Q01581 520 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PRDX1Q06830 199 aaKnown RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 MYBPC3Q14896 1274 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PON2Q15165 354 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 MLF2Q15773 248 aaPredicted RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 SMAD2Q15796 467 aaKnown RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 CYP51A1Q16850 503 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 C2orf27AQ580R0 203 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 SGO1Q5FBB7 561 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 SPANXN4Q5MJ08 99 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 TBCELQ5QJ74 424 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 DOK6Q6PKX4 331 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 KIAA1324Q6UXG2 1013 aaKnown RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 DLEU7Q6UYE1 221 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 SLC36A4Q6YBV0 504 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 C11orf74Q86VG3 221 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 RETREG3Q86VR2 466 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 FAM129CQ86XR2 697 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PDSS2Q86YH6 399 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 RIMKLAQ8IXN7 391 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PHACTR4Q8IZ21 702 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 ST13P4Q8IZP2 240 aaPredicted RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 SVOPLQ8N434 492 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 DCBLD1Q8N8Z6 715 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 CADM4Q8NFZ8 388 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 OR4K1Q8NGD4 311 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 RPLP0P6Q8NHW5 317 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 RASSF5Q8WWW0 418 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 MYLIPQ8WY64 445 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 FKBP10Q96AY3 582 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 RGMAQ96B86 450 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 MOAP1Q96BY2 351 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PYCR2Q96C36 320 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PPCDCQ96CD2 204 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 COQ8BQ96D53 544 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 FAM120BQ96EK7 910 aaKnown RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 CCDC97Q96F63 343 aaPredicted RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 SPACA7Q96KW9 195 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 APOLD1Q96LR9 279 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 TMEM74Q96NL1 305 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PANX1Q96RD7 426 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 FERD3LQ96RJ6 166 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 MKRN2Q9H000 416 aaKnown RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 PRO3102Q9H379 93 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 OSGEPL1Q9H4B0 414 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 UBE2ZQ9H832 354 aaPredicted RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 PLSCR2Q9NRY7 297 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 GEMIN8Q9NWZ8 242 aaKnown RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 NDUFA13Q9P0J0 144 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PCDH10Q9P2E7 1040 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 GULP1Q9UBP9 304 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 NKX1-2Q9UD57 310 aaPredicted RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 ENOPH1Q9UHY7 261 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 RIMS3Q9UJD0 308 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 BAG5Q9UL15 447 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PSME2Q9UL46 239 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 DUSP12Q9UNI6 340 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 ZFR2Q9UPR6 939 aaKnown RBP7.24□□□□□ -1.25
VPS39-204ENST00000561818 ICKQ9UPZ9 632 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 PTGDR2Q9Y5Y4 395 aa7.24□□□□□ -1.25
VPS39-204ENST00000561818 TRPM6Q9BX84 2022 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 A0A1B0GTL3 188 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 TCRBV21S2A2A0A5A6 115 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 C2CD4DB7Z1M9 353 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 H3BNX3 289 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 TXNDC9O14530 226 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 ZW10O43264 779 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 DENRO43583 198 aaKnown RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 DPM1O60762 260 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 ADAM23O75077 832 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 PDE9AO76083 593 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 TNFAIP8O95379 198 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 HPRP00739 348 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 ACP5P13686 325 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 GPX2P18283 190 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 CDH2P19022 906 aaPredicted RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 GGT1P19440 569 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 TCN1P20061 433 aaPredicted RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 IGFBP4P22692 258 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 TPMTP51580 245 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 MAPK10P53779 464 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 NME5P56597 212 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 RGS1Q08116 209 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 MESP2Q0VG99 397 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 PDE7AQ13946 482 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 PTGR1Q14914 329 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 MLC1Q15049 377 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 C18orf21Q32NC0 220 aaPredicted RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 LEXMQ3ZCV2 418 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 SLC44A4Q53GD3 710 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 RUNDC3AQ59EK9 446 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 FBXO48Q5FWF7 155 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 DEPDC1Q5TB30 811 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 KHDRBS2Q5VWX1 349 aaKnown RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 KIAA0895LQ68EN5 471 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms