RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 ATG9BQ674R7 924 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 RHBDD2Q6NTF9 364 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 ASPGQ86U10 573 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 LCA5Q86VQ0 697 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 SRRM1Q8IYB3 904 aaKnown RBP13.68□□□□□ -0.22
USP3-205ENST00000557884 TMEM151AQ8N4L1 468 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 TBC1D19Q8N5T2 526 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 MFSD9Q8NBP5 474 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 KIAA1143Q96AT1 154 aaPredicted RBP13.68□□□□□ -0.22
USP3-205ENST00000557884 CRELD1Q96HD1 420 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 C10orf90Q96M02 699 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 GBP5Q96PP8 586 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 CCNL2Q96S94 520 aaPredicted RBP13.68□□□□□ -0.22
USP3-205ENST00000557884 TMEM109Q9BVC6 243 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 CAPS2Q9BXY5 557 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 C12orf65Q9H3J6 166 aaKnown RBP13.68□□□□□ -0.22
USP3-205ENST00000557884 GPN2Q9H9Y4 310 aaPredicted RBP13.68□□□□□ -0.22
USP3-205ENST00000557884 CPNE5Q9HCH3 593 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 ACSS2Q9NR19 701 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 GEMIN8Q9NWZ8 242 aaKnown RBP13.68□□□□□ -0.22
USP3-205ENST00000557884 IL17BQ9UHF5 180 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 DCDC2Q9UHG0 476 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 EMCNQ9ULC0 261 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 MRPS18BQ9Y676 258 aaKnown RBP13.68□□□□□ -0.22
USP3-205ENST00000557884 PKD1L2Q7Z442 2459 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 SDK2Q58EX2 2172 aa13.68□□□□□ -0.22
USP3-205ENST00000557884 SNRNP200O75643 2136 aaKnown RBP13.67□□□□□ -0.22
USP3-205ENST00000557884 KCNE1BA0A087WTH5 132 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 A8MT66 165 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 NDUFS4O43181 175 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 EFSO43281 561 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 KATNA1O75449 491 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 EPB42P16452 691 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 TCN2P20062 427 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 TAC1P20366 129 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 ITGAXP20702 1163 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 CRHR1P34998 444 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 SCTRP47872 440 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 ARSFP54793 590 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 NFKB2Q00653 900 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 IRF8Q02556 426 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 SLC18A2Q05940 514 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 CHIT1Q13231 466 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 DNASE1L3Q13609 305 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 DOC2AQ14183 400 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 CEP85LQ5SZL2 805 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 ZNF385CQ66K41 422 aaPredicted RBP13.67□□□□□ -0.22
USP3-205ENST00000557884 FAM198BQ6UWH4 519 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 RPS27LQ71UM5 84 aaKnown RBP13.67□□□□□ -0.22
USP3-205ENST00000557884 GOLGA7Q7Z5G4 137 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 TRABD2AQ86V40 505 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 IQCKQ8N0W5 287 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 PROKR1Q8TCW9 393 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.67□□□□□ -0.22
USP3-205ENST00000557884 SLC13A3Q8WWT9 602 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 THAP11Q96EK4 314 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 MOCOSQ96EN8 888 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 LRFN5Q96NI6 719 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 CENPHQ9H3R5 247 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 TMCO1Q9UM00 188 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 TNPO3Q9Y5L0 923 aaKnown RBP13.67□□□□□ -0.22
USP3-205ENST00000557884 MAU2Q9Y6X3 613 aa13.67□□□□□ -0.22
USP3-205ENST00000557884 A0A1B0GX78 115 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 STX16-NPEPL1H3BU86 382 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 STX16O14662 325 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 DSCR3O14972 297 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 RGS16O15492 202 aaPredicted RBP13.66□□□□□ -0.22
USP3-205ENST00000557884 CTIFO43310 598 aaKnown RBP13.66□□□□□ -0.22
USP3-205ENST00000557884 DLX3O60479 287 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 SPAG7O75391 227 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 CD22P20273 847 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 AGXTP21549 392 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 OR1D4P47884 311 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 CCT5P48643 541 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 RPS18P62269 152 aaKnown RBP13.66□□□□□ -0.22
USP3-205ENST00000557884 SNRPNP63162 240 aaKnown RBP13.66□□□□□ -0.22
USP3-205ENST00000557884 DCDP81605 110 aaKnown RBP13.66□□□□□ -0.22
USP3-205ENST00000557884 GTF2H2Q13888 395 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 PCBP2Q15366 365 aaKnown RBP eCLIP13.66□□□□□ -0.227e-7■■■■■ 28.7
USP3-205ENST00000557884 MUM1Q2TAK8 710 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 FAM214AQ32MH5 1076 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 NKAIN1Q4KMZ8 207 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 FAM69BQ5VUD6 431 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 YOD1Q5VVQ6 348 aaPredicted RBP13.66□□□□□ -0.22
USP3-205ENST00000557884 MLIPQ5VWP3 458 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 GTF2H2CQ6P1K8 395 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 TMIGD1Q6UXZ0 262 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 CCDC81Q6ZN84 652 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 MYLK4Q86YV6 388 aaPredicted RBP13.66□□□□□ -0.22
USP3-205ENST00000557884 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.66□□□□□ -0.223e-6■■■■■ 29
USP3-205ENST00000557884 KRT78Q8N1N4 520 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 ANKRD53Q8N9V6 530 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 KCT2Q8NC54 265 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 CAMKVQ8NCB2 501 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 ZCCHC10Q8TBK6 192 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 NSUN5Q96P11 429 aaKnown RBP13.66□□□□□ -0.22
USP3-205ENST00000557884 NLNQ9BYT8 704 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 PRM3Q9NNZ6 103 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 ENAMQ9NRM1 1142 aa13.66□□□□□ -0.22
USP3-205ENST00000557884 IFT80Q9P2H3 777 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms