RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SV2AQ7L0J3 742 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 SLC26A9Q7LBE3 791 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 MILR1Q7Z6M3 343 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 ENTHD1Q8IYW4 607 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 OXR1Q8N573 874 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 C19orf18Q8NEA5 215 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 ZBED6CLQ96FA7 236 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 CERS2Q96G23 380 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 TMEM41AQ96HV5 264 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 NARS2Q96I59 477 aaKnown RBP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 CSPG4P5Q96PW8 444 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 CMSS1Q9BQ75 279 aaKnown RBP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 OSBPL2Q9H1P3 480 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 FBRSL1Q9HCM7 1045 aaKnown RBP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 ZNF334Q9HCZ1 680 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 CYTH4Q9UIA0 394 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 SSR3Q9UNL2 185 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 PKP3Q9Y446 797 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 PRSS47A8MTI9 375 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 HRGP04196 525 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 TSPAN19P0C672 248 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 ZDHHC11BP0C7U3 371 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 HNRNPLP14866 589 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 LAP3P28838 519 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 RAB4BP61018 213 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 SERTAD2Q14140 314 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 SEC23BQ15437 767 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 PROX2Q3B8N5 592 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 NOMO2Q5JPE7 1267 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 PRAMEF19Q5SWL8 479 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 LRRC66Q68CR7 880 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 NOTUMQ6P988 496 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 TRMT11Q7Z4G4 463 aaKnown RBP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 TMEM179BQ7Z7N9 219 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 HIPK1Q86Z02 1210 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 CBWD2Q8IUF1 395 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 ADHFE1Q8IWW8 467 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 CARFQ8N187 725 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 MIER2Q8N344 545 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 ARNTL2Q8WYA1 636 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 UCN3Q969E3 161 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 CREB3L1Q96BA8 519 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 MRPS24Q96EL2 167 aaKnown RBP13.39□□□□□ -0.27
SHMT2-226ENST00000556825 NEU1Q99519 415 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 TCEAL7Q9BRU2 100 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 RIBC2Q9H4K1 309 aa13.39□□□□□ -0.27
SHMT2-226ENST00000556825 LYRM1O43325 122 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 SOX30O94993 753 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 ZNF37AP17032 561 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-226ENST00000556825 NDUFB7P17568 137 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 RPS19P39019 145 aaKnown RBP13.38□□□□□ -0.27
SHMT2-226ENST00000556825 SNRPFP62306 86 aaKnown RBP13.38□□□□□ -0.27
SHMT2-226ENST00000556825 DEFA5Q01523 94 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 SMAD1Q15797 465 aaKnown RBP13.38□□□□□ -0.27
SHMT2-226ENST00000556825 SNRNP35Q16560 246 aaKnown RBP13.38□□□□□ -0.27
SHMT2-226ENST00000556825 TSTD2Q5T7W7 516 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 C19orf48Q6RUI8 117 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 SLC22A9Q8IVM8 553 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 FSTL5Q8N475 847 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-226ENST00000556825 CLEC4DQ8WXI8 215 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 CPNE4Q96A23 557 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-226ENST00000556825 RAD9AQ99638 391 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 GSDMCQ9BYG8 508 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 NT5DC2Q9H857 520 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 EVA1AQ9H8M9 152 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 EML4Q9HC35 981 aaKnown RBP13.38□□□□□ -0.27
SHMT2-226ENST00000556825 SLC52A3Q9NQ40 469 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 SLCO1C1Q9NYB5 712 aa13.38□□□□□ -0.27
SHMT2-226ENST00000556825 DDX60LQ5H9U9 1706 aaKnown RBP13.38□□□□□ -0.27
SHMT2-226ENST00000556825 A0A096LPI6 279 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 TEX13CA0A0J9YWL9 993 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 IQCMA0A1B0GVH7 501 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 SPDYE2BA6NHP3 402 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 WBP4O75554 376 aaKnown RBP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 CREG1O75629 220 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 GADD45GO95257 159 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 MATN4O95460 622 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 CXCL14O95715 111 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 SPDYE6P0CI01 402 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 SPP1P10451 314 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 IGFBP5P24593 272 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 C21orf33P30042 268 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 GLRBP48167 497 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 CSRP3P50461 194 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 DNAJB13P59910 316 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 PPA1Q15181 289 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 EML3Q32P44 896 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 RNF212Q495C1 297 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 SPDYE2Q495Y8 402 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 KANSL1Q7Z3B3 1105 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 ZDHHC17Q8IUH5 632 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 WDSUB1Q8N9V3 476 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 OR11H7Q8NGC8 314 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 WDR20Q8TBZ3 569 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 MTERF3Q96E29 417 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 FCRL3Q96P31 734 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 HSD17B14Q9BPX1 270 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 H2AFJQ9BTM1 129 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 ASPNQ9BXN1 380 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms