RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ZNF324BQ6AW86 544 aaPredicted RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 ZNF470Q6ECI4 717 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 TTC27Q6P3X3 843 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 CASC4Q6P4E1 433 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 NEK10Q6ZWH5 1172 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 SIRT6Q8N6T7 355 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 FBXO15Q8NCQ5 510 aaPredicted RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 ASB11Q8WXH4 323 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 HAS2Q92819 552 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 ZNF669Q96BR6 464 aaPredicted RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 MVB12AQ96EY5 273 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 MMABQ96EY8 250 aaPredicted RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 TAAR6Q96RI8 345 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 SLX1AQ9BQ83 275 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 FBXO6Q9NRD1 293 aaPredicted RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 FAM114A2Q9NRY5 505 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 INTS10Q9NVR2 710 aaKnown RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 PCYOX1Q9UHG3 505 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 MRPS2Q9Y399 296 aaKnown RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 PCM1Q15154 2024 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 MAGEB16A2A368 324 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 DYTNA2CJ06 578 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 SDR42E2A6NKP2 422 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 ZNF839A8K0R7 811 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 GOLGA6L6A8MZA4 724 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 GOLGA8MH3BSY2 632 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 H7BY64 318 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 GFYI3L273 518 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 HAT1O14929 419 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 PRPF4O43172 522 aaKnown RBP eCLIP8.02□□□□□ -1.13
USP28-215ENST00000545608 KIF5CO60282 957 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 JRKO75564 520 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 WFS1O76024 890 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 CCNDBP1O95273 360 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 BMP10O95393 424 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 ANXA5P08758 320 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 STSP08842 583 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 CCDC175P0C221 793 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 MPC1LP0DKB6 136 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 ITGAMP11215 1152 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 BMP2P12643 396 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 EZRP15311 586 aaKnown RBP8.02□□□□□ -1.13
USP28-215ENST00000545608 IMPA1P29218 277 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 TNFSF10P50591 281 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 TDGF1P3P51864 188 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 KCNK10P57789 538 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 ABATP80404 500 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 RELAQ04206 551 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 THOC5Q13769 683 aaKnown RBP8.02□□□□□ -1.13
USP28-215ENST00000545608 PCOLCEQ15113 449 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 ZRSR2Q15696 482 aaKnown RBP8.02□□□□□ -1.13
USP28-215ENST00000545608 TTLL9Q3SXZ7 439 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 C1QL3Q5VWW1 255 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 TMEM205Q6UW68 189 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 FAM180AQ6UWF9 173 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 ADCK2Q7Z695 626 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 ZC3H7AQ8IWR0 971 aaKnown RBP8.02□□□□□ -1.13
USP28-215ENST00000545608 AGGF1Q8N302 714 aaeCLIP8.02□□□□□ -1.13
USP28-215ENST00000545608 BCORP1Q8N888 145 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 MCUQ8NE86 351 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 TRIM58Q8NG06 486 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 FBF1Q8TES7 1133 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 RERGQ96A58 199 aaPredicted RBP8.02□□□□□ -1.13
USP28-215ENST00000545608 MAGEB10Q96LZ2 347 aaPredicted RBP8.02□□□□□ -1.13
USP28-215ENST00000545608 PRAP1Q96NZ9 151 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 GPR21Q99679 349 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 TGIF2Q9GZN2 237 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 ZNF700Q9H0M5 742 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 MKKSQ9NPJ1 570 aaPredicted RBP8.02□□□□□ -1.13
USP28-215ENST00000545608 HOMER3Q9NSC5 361 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 OLAHQ9NV23 265 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 C14orf105Q9NVL8 296 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 RIC8BQ9NVN3 520 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 UTP6Q9NYH9 597 aaKnown RBP8.02□□□□□ -1.13
USP28-215ENST00000545608 KLHL42Q9P2K6 505 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 MKL2Q9ULH7 1088 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 DHRS7Q9Y394 339 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 NEU2Q9Y3R4 380 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 NBPF19A0A087WUL8 3843 aa8.02□□□□□ -1.13
USP28-215ENST00000545608 CREBBPQ92793 2442 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 TRAV17A0A0B4J275 112 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 IGHV3-20A0A0C4DH32 117 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 TXNDC9O14530 226 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 PCDH17O14917 1159 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 ZBTB14O43829 449 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 ZG16O60844 167 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 WISP2O76076 250 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 HAUS5O94927 633 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 WDPCPO95876 746 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 MLNP12872 115 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 FDXRP22570 491 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 SKIV2L2P42285 1042 aaKnown RBP8.01□□□□□ -1.13
USP28-215ENST00000545608 SLC1A2P43004 574 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 MPP1Q00013 466 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 POU4F2Q12837 409 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 FAM53BQ14153 422 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 NDUFA9Q16795 377 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 THEMIS2Q5TEJ8 643 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 ARMC3Q5W041 872 aa8.01□□□□□ -1.13
USP28-215ENST00000545608 RIPOR1Q6ZS17 1223 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms