RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 BIKQ13323 160 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 C22orf39Q6P5X5 142 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 KIF18BQ86Y91 864 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 CELF5Q8N6W0 485 aaKnown RBP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 ZNF641Q96N77 438 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 AIFM2Q9BRQ8 373 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 NANOGQ9H9S0 305 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 COLEC10Q9Y6Z7 277 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 AP3D1O14617 1153 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 SLC2A2P11168 524 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 ASMTP46597 345 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 DNAJB13P59910 316 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 SELPLGQ14242 412 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 PON2Q15165 354 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 HMBOX1Q6NT76 420 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 FGD2Q7Z6J4 655 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 SLC37A3Q8NCC5 494 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 NUSAP1Q9BXS6 441 aaKnown RBP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 RBM38Q9H0Z9 239 aaKnown RBP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 C1orf109Q9NX04 203 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 PCDHGB6Q9Y5F9 930 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 MYH14Q7Z406 1995 aaKnown RBP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 CHURC1-FNTBB4DL54 471 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 ALX3O95076 343 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 HSD17B1P14061 328 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 GDF5P43026 501 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 UGT2B15P54855 530 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 CLDN10P78369 228 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 GPR33Q49SQ1 333 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 PIK3R6Q5UE93 754 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 CEP68Q76N32 757 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 AMZ2Q86W34 360 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 MINDY1Q8N5J2 469 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 TMEM74Q96NL1 305 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 FCRL3Q96P31 734 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 GALPQ9UBC7 116 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 HLA-DQA2P01906 255 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 MT-ND2P03891 347 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 VEGFBP49765 207 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 NFKB2Q00653 900 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 MACC1Q6ZN28 852 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 OR52L1Q8NGH7 329 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 HMGB4Q8WW32 186 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 SLC9A6Q92581 669 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 C1GALT1C1Q96EU7 318 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 TTLL2Q9BWV7 592 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 C3orf14Q9HBI5 128 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 NPAP1Q9NZP6 1156 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 AKAP7Q9P0M2 348 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-213ENST00000514442 KAT6AQ92794 2004 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 AGAP5A6NIR3 686 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 MMP20O60882 483 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 PRKACGP22612 351 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 STK19P49842 368 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-213ENST00000514442 PTSQ03393 145 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 RIPPLY1Q0D2K3 151 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 UBXN2BQ14CS0 331 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 STEAP4Q687X5 459 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 COMMD2Q86X83 199 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 POMGNT2Q8NAT1 580 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 OR52J3Q8NH60 311 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 RHOXF1Q8NHV9 184 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 RAD51AP1Q96B01 352 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 MRPL48Q96GC5 212 aaKnown RBP12.75□□□□□ -0.37
TCOF1-213ENST00000514442 TMEM181Q9P2C4 612 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 PLCL2Q9UPR0 1127 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 CMAHPQ9Y471 501 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 HAS3O00219 553 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 TPPPO94811 219 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 CMPK1P30085 196 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 NHSL2Q5HYW2 709 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 CILP2Q8IUL8 1156 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 C12orf76Q8N812 135 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-213ENST00000514442 BPIFB1Q8TDL5 484 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 ADAMTS15Q8TE58 950 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 KIFC1Q9BW19 673 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 GNB5O14775 395 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 DCLK1O15075 740 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 B4GAT1O43505 415 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 GMFGO60234 142 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 MPZL2O60487 215 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 BMP4P12644 408 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 RPL4P36578 427 aaKnown RBP12.75□□□□□ -0.37
TCOF1-213ENST00000514442 RPS14P62263 151 aaKnown RBP12.75□□□□□ -0.37
TCOF1-213ENST00000514442 LRRTM3Q86VH5 581 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 DCAF4L2Q8NA75 395 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 SNX18Q96RF0 628 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 RANBP9Q96S59 729 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 GON7Q9BXV9 100 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 QPCTLQ9NXS2 382 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 EMCNQ9ULC0 261 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 PRKAB1Q9Y478 270 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 COL18A1P39060 1754 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 KERAO60938 352 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 MTRF1O75570 445 aaKnown RBP12.75□□□□□ -0.37
TCOF1-213ENST00000514442 NR2F6P10588 404 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 ALAS2P22557 587 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 BDKRB1P46663 353 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 TAS2R41P59536 307 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms