RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ZNF273Q14593 569 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 PSMD6Q15008 389 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 NPTX1Q15818 432 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 SLC25A53Q5H9E4 307 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 PPP1R21Q6ZMI0 780 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 G2E3Q7L622 706 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 IQUBQ8NA54 791 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 NOA1Q8NC60 698 aaKnown RBP3.01□□□□□ -1.93
VPS50-219ENST00000495039 Q8NFD4 153 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 NUP37Q8NFH4 326 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 VANGL1Q8TAA9 524 aaPredicted RBP3.01□□□□□ -1.93
VPS50-219ENST00000495039 PROX1Q92786 737 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 RMDN2Q96LZ7 410 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 GTPBP2Q9BX10 602 aaKnown RBP3.01□□□□□ -1.93
VPS50-219ENST00000495039 SLC2A11Q9BYW1 496 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 SHARPINQ9H0F6 387 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 Q9H8V8 135 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 DNAJC4Q9NNZ3 241 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 OR6C2Q9NZP2 312 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 C19orf25Q9UFG5 118 aaPredicted RBP3.01□□□□□ -1.93
VPS50-219ENST00000495039 POLLQ9UGP5 575 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 ANAPC5Q9UJX4 755 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 CHKBQ9Y259 395 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 TRAV24A0A0B4J272 114 aa3□□□□□ -1.93
VPS50-219ENST00000495039 TSPY2A6NKD2 308 aa3□□□□□ -1.93
VPS50-219ENST00000495039 SNX3O60493 162 aa3□□□□□ -1.93
VPS50-219ENST00000495039 EIF5BO60841 1220 aaKnown RBP3□□□□□ -1.93
VPS50-219ENST00000495039 CDK2AP2O75956 126 aa3□□□□□ -1.93
VPS50-219ENST00000495039 GSRP00390 522 aa3□□□□□ -1.93
VPS50-219ENST00000495039 PRB2P02812 416 aaPredicted RBP3□□□□□ -1.93
VPS50-219ENST00000495039 MELTFP08582 738 aa3□□□□□ -1.93
VPS50-219ENST00000495039 TSPY3P0CV98 308 aa3□□□□□ -1.93
VPS50-219ENST00000495039 TSPY8P0CW00 308 aa3□□□□□ -1.93
VPS50-219ENST00000495039 ACAT1P24752 427 aaKnown RBP3□□□□□ -1.93
VPS50-219ENST00000495039 VAMP7P51809 220 aa3□□□□□ -1.93
VPS50-219ENST00000495039 UBASH3AP57075 661 aa3□□□□□ -1.93
VPS50-219ENST00000495039 TSPY1Q01534 308 aa3□□□□□ -1.93
VPS50-219ENST00000495039 MZT1Q08AG7 82 aa3□□□□□ -1.93
VPS50-219ENST00000495039 LYSMD4Q5XG99 296 aa3□□□□□ -1.93
VPS50-219ENST00000495039 OR4A47Q6IF82 309 aa3□□□□□ -1.93
VPS50-219ENST00000495039 ENPP7Q6UWV6 458 aa3□□□□□ -1.93
VPS50-219ENST00000495039 C11orf57Q6ZUT1 292 aaPredicted RBP3□□□□□ -1.93
VPS50-219ENST00000495039 CCAR2Q8N163 923 aaKnown RBP3□□□□□ -1.93
VPS50-219ENST00000495039 ANKRD13CQ8N6S4 541 aa3□□□□□ -1.93
VPS50-219ENST00000495039 RASGEF1AQ8N9B8 481 aa3□□□□□ -1.93
VPS50-219ENST00000495039 CNOT6LQ96LI5 555 aaKnown RBP3□□□□□ -1.93
VPS50-219ENST00000495039 AGAP4Q96P64 663 aa3□□□□□ -1.93
VPS50-219ENST00000495039 CCDC3Q9BQI4 270 aa3□□□□□ -1.93
VPS50-219ENST00000495039 KATNB1Q9BVA0 655 aa3□□□□□ -1.93
VPS50-219ENST00000495039 FZD8Q9H461 694 aa3□□□□□ -1.93
VPS50-219ENST00000495039 FN3KQ9H479 309 aa3□□□□□ -1.93
VPS50-219ENST00000495039 NDE1Q9NXR1 346 aa3□□□□□ -1.93
VPS50-219ENST00000495039 ANAPC11Q9NYG5 84 aa3□□□□□ -1.93
VPS50-219ENST00000495039 ANXA2P2A6NMY6 339 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 O00370 1275 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 TBCAO75347 108 aaKnown RBP2.99□□□□□ -1.93
VPS50-219ENST00000495039 ATP6AP2O75787 350 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 LUC7L3O95232 432 aaKnown RBP2.99□□□□□ -1.93
VPS50-219ENST00000495039 LHCGRP22888 699 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 POU5F1Q01860 360 aaKnown RBP2.99□□□□□ -1.93
VPS50-219ENST00000495039 ILF2Q12905 390 aaKnown RBP2.99□□□□□ -1.93
VPS50-219ENST00000495039 TRAP1Q12931 704 aaKnown RBP2.99□□□□□ -1.93
VPS50-219ENST00000495039 NONOQ15233 471 aaKnown RBP eCLIP2.99□□□□□ -1.93
VPS50-219ENST00000495039 MTHFSDQ2M296 383 aaKnown RBP2.99□□□□□ -1.93
VPS50-219ENST00000495039 C6orf136Q5SQH8 315 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 DMKNQ6E0U4 476 aaPredicted RBP2.99□□□□□ -1.93
VPS50-219ENST00000495039 UGT3A1Q6NUS8 523 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 TMEM207Q6UWW9 146 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 ABHD12Q8N2K0 398 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 AQP11Q8NBQ7 271 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 GPRC5AQ8NFJ5 357 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 OR10Q1Q8NGQ4 319 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 SETD6Q8TBK2 473 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 PGM2Q96G03 612 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 C1orf147Q96MC9 270 aaPredicted RBP2.99□□□□□ -1.93
VPS50-219ENST00000495039 GBP5Q96PP8 586 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 SPAG5Q96R06 1193 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 FERMT1Q9BQL6 677 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 SNX25Q9H3E2 840 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 MED20Q9H944 212 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 NYAP2Q9P242 653 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 ZNF107Q9UII5 783 aaPredicted RBP2.99□□□□□ -1.93
VPS50-219ENST00000495039 POMT2Q9UKY4 750 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 SNX7Q9UNH6 387 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 R4GN57 208 aa2.99□□□□□ -1.93
VPS50-219ENST00000495039 COL16A1Q07092 1604 aaPredicted RBP2.99□□□□□ -1.93
VPS50-219ENST00000495039 A0A1W2PPW3 197 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 CCDC188H7C350 402 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 GPRIN2O60269 458 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 HOXD4P09016 255 aaPredicted RBP2.98□□□□□ -1.93
VPS50-219ENST00000495039 PRKAR1AP10644 381 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 GP1BBP13224 206 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 PDGFRAP16234 1089 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 CD27P26842 260 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 CETN2P41208 172 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 NPY4RP50391 375 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 MYL7Q01449 175 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 RASGEF1BQ0VAM2 473 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 TFCP2Q12800 502 aa2.98□□□□□ -1.93
VPS50-219ENST00000495039 LACTB2Q53H82 288 aaPredicted RBP2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms