RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SAMD4BQ5PRF9 694 aaKnown RBP11.72□□□□□ -0.53
HDAC6-230ENST00000488543 SLCO4C1Q6ZQN7 724 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 RNF217Q8TC41 542 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 TSACCQ96A04 125 aaPredicted RBP11.72□□□□□ -0.53
HDAC6-230ENST00000488543 NRTNQ99748 197 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 GPRC5BQ9NZH0 403 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 KCNK6Q9Y257 313 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 EIF3LQ9Y262 564 aaKnown RBP11.72□□□□□ -0.53
HDAC6-230ENST00000488543 SLC17A4Q9Y2C5 497 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 PCM1Q15154 2024 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 CCDC154A6NI56 674 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 PRR19A6NJB7 356 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 DLGAP1O14490 977 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 SEC22BO75396 215 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 APBB3O95704 486 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 CDK4P11802 303 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 CXCL12P48061 93 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 CTBSQ01459 385 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 TAP2Q03519 686 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 MAD2L1Q13257 205 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-230ENST00000488543 PTGR1Q14914 329 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 TIGD2Q4W5G0 525 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 KIAA0895LQ68EN5 471 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 CAPN13Q6MZZ7 669 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-230ENST00000488543 ENPP7Q6UWV6 458 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 TMEM126BQ8IUX1 230 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 SLC15A3Q8IY34 581 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 SYTL1Q8IYJ3 562 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 ZNF786Q8N393 782 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 LIX1Q8N485 282 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 MINDY1Q8N5J2 469 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 NEIL2Q969S2 332 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 CMTM7Q96FZ5 175 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 IL17FQ96PD4 163 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 ABCD2Q9UBJ2 740 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 ASF1AQ9Y294 204 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 DLGAP4Q9Y2H0 992 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-230ENST00000488543 GPSM3Q9Y4H4 160 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 H0YIV9 168 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 H3BNH8 94 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 K7ESF4 209 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 CACNB4O00305 520 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-230ENST00000488543 MAGEB3O15480 346 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 ZNF217O75362 1048 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 BCKDHAP12694 445 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 NPPBP16860 134 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 VARSP26640 1264 aaKnown RBP11.71□□□□□ -0.53
HDAC6-230ENST00000488543 HNF4AP41235 474 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 RPS9P46781 194 aaKnown RBP11.71□□□□□ -0.53
HDAC6-230ENST00000488543 HSPA13P48723 471 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 MAPK10P53779 464 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 PNLIPRP1P54315 467 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 NR1H2P55055 460 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 TXNL4AP83876 142 aaKnown RBP11.71□□□□□ -0.53
HDAC6-230ENST00000488543 PRKG2Q13237 762 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 Q6ZSR6 202 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 ARMCX6Q7L4S7 300 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 TMEM145Q8NBT3 493 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 OR13H1Q8NG92 308 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 TFGQ92734 400 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-230ENST00000488543 LRRC58Q96CX6 371 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 WDR34Q96EX3 536 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 PDXPQ96GD0 296 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 APIPQ96GX9 242 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 FCRL1Q96LA6 429 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 LEF1Q9UJU2 399 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-230ENST00000488543 PLAGL1Q9UM63 463 aa11.71□□□□□ -0.53
HDAC6-230ENST00000488543 H6PDO95479 791 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 ERGP11308 486 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 YAP1P46937 504 aaKnown RBP11.7□□□□□ -0.54
HDAC6-230ENST00000488543 ZNF33BQ06732 778 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 PYCR3Q53H96 274 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 ZNF542PQ5EBM4 170 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 NHSL2Q5HYW2 709 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 ADNP2Q6IQ32 1131 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 GALNT13Q8IUC8 556 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 DCUN1D3Q8IWE4 304 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 CCL4L1Q8NHW4 92 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 CYGBQ8WWM9 190 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 OR1E3Q8WZA6 343 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 RMND5BQ96G75 393 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-230ENST00000488543 SCARF2Q96GP6 870 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-230ENST00000488543 HOPXQ9BPY8 73 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-230ENST00000488543 ORAI3Q9BRQ5 295 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 TIMM29Q9BSF4 260 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 DCUN1D5Q9BTE7 237 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 MENTQ9BUN1 341 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 OSGEPL1Q9H4B0 414 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 OAZ3Q9UMX2 235 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 MYRFQ9Y2G1 1151 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 WDR37Q9Y2I8 494 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 DHRS12A0PJE2 317 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 ARPC2O15144 300 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 TRMUO75648 421 aaKnown RBP11.7□□□□□ -0.54
HDAC6-230ENST00000488543 KELP23276 732 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 SLC6A2P23975 617 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 STT3AP46977 705 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 DGKQP52824 942 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 FOXM1Q08050 763 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms