RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 K7EPI3 171 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 TERTO14746 1132 aaKnown RBP11.9□□□□□ -0.5
SKA1-203ENST00000417656 DSCR3O14972 297 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 EFSO43281 561 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 OR1F1O43749 312 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 LCMT2O60294 686 aaKnown RBP11.9□□□□□ -0.5
SKA1-203ENST00000417656 PRAMEF4O60810 478 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 SMIM24O75264 130 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 SIX3O95343 332 aaPredicted RBP11.9□□□□□ -0.5
SKA1-203ENST00000417656 KLK3P07288 261 aaPredicted RBP11.9□□□□□ -0.5
SKA1-203ENST00000417656 SBK3P0C264 359 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 GNAZP19086 355 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 TCN2P20062 427 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 ITGAXP20702 1163 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 SCTRP47872 440 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 ARSFP54793 590 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 UCNP55089 124 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 CXADRP78310 365 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 CYP4F2P78329 520 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 YOD1Q5VVQ6 348 aaPredicted RBP11.9□□□□□ -0.5
SKA1-203ENST00000417656 PRAMEF9Q5VWM5 478 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 C16orf46Q6P387 395 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 ZNF517Q6ZMY9 492 aaPredicted RBP11.9□□□□□ -0.5
SKA1-203ENST00000417656 CCDC81Q6ZN84 652 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 ASPGQ86U10 573 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 CNPY4Q8N129 248 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 C4orf33Q8N1A6 199 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 MFSD9Q8NBP5 474 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 ZCCHC10Q8TBK6 192 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 THAP11Q96EK4 314 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 AIF1LQ9BQI0 150 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 GEMIN8Q9NWZ8 242 aaKnown RBP11.9□□□□□ -0.5
SKA1-203ENST00000417656 LGALS13Q9UHV8 139 aa11.9□□□□□ -0.5
SKA1-203ENST00000417656 MRPS2Q9Y399 296 aaKnown RBP11.9□□□□□ -0.5
SKA1-203ENST00000417656 PTPRQQ9UMZ3 2332 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 KCNE1BA0A087WTH5 132 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 A8MT66 165 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 C21orf140B9A014 251 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 C9J4A7 227 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 CLGNO14967 610 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 GLRA3O75311 464 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 KATNA1O75449 491 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 GSTA1P08263 222 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 C1GALT1C1LP0DN25 315 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 AGXTP21549 392 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 ALAS2P22557 587 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 EEF1DP29692 281 aaKnown RBP11.89□□□□□ -0.51
SKA1-203ENST00000417656 RPS18P62269 152 aaKnown RBP11.89□□□□□ -0.51
SKA1-203ENST00000417656 SNRPNP63162 240 aaKnown RBP11.89□□□□□ -0.51
SKA1-203ENST00000417656 NFKB2Q00653 900 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 ZNF844Q08AG5 666 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 NCF4Q15080 339 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 MUM1Q2TAK8 710 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 XKR6Q5GH73 641 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 ARHGAP40Q5TG30 622 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 ATG9BQ674R7 924 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 SH2D5Q6ZV89 423 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 GOLGA7Q7Z5G4 137 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 LCA5Q86VQ0 697 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.89□□□□□ -0.51
SKA1-203ENST00000417656 TMEM151AQ8N4L1 468 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 ARHGEF39Q8N4T4 335 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 TBC1D19Q8N5T2 526 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 TEX9Q8N6V9 391 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 ENDOVQ8N8Q3 282 aaKnown RBP11.89□□□□□ -0.51
SKA1-203ENST00000417656 ANKRD53Q8N9V6 530 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.89□□□□□ -0.51
SKA1-203ENST00000417656 STARD8Q92502 1023 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 PHF21BQ96EK2 531 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 SARGQ9BW04 601 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 NLNQ9BYT8 704 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 ACTL8Q9H568 366 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 EMCNQ9ULC0 261 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 TMCO1Q9UM00 188 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 ANGPTL3Q9Y5C1 460 aa11.89□□□□□ -0.51
SKA1-203ENST00000417656 KMT2BQ9UMN6 2715 aaPredicted RBP11.88□□□□□ -0.51
SKA1-203ENST00000417656 CCDC151A5D8V7 595 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 STX16-NPEPL1H3BU86 382 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 E2F3O00716 465 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 TXNDC9O14530 226 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 STX16O14662 325 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 NDUFS4O43181 175 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 ERLIN1O75477 346 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 SERPIND1P05546 499 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 CAPN1P07384 714 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 SLC35G6P0C7Q6 338 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 EPB42P16452 691 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 KRT4P19013 534 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 CD22P20273 847 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 OR1D4P47884 311 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 DCDP81605 110 aaKnown RBP11.88□□□□□ -0.51
SKA1-203ENST00000417656 IRF8Q02556 426 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 VAC14Q08AM6 782 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 CHIT1Q13231 466 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 DOC2AQ14183 400 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 RBBP5Q15291 538 aaKnown RBP11.88□□□□□ -0.51
SKA1-203ENST00000417656 PCBP2Q15366 365 aaKnown RBP eCLIP11.88□□□□□ -0.51
SKA1-203ENST00000417656 FAM214AQ32MH5 1076 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 KRT71Q3SY84 523 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 NKAIN1Q4KMZ8 207 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms