RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 MENTQ9BUN1 341 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 SRMSQ9H3Y6 488 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 SPAG4Q9NPE6 437 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 ADA2Q9NZK5 511 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 GVINP1Q7Z2Y8 2422 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 ACOT8O14734 319 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 TNFSF14O43557 240 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 SLC16A8O95907 504 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 LINC00032P0C843 101 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 HGFP14210 728 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 ERFP50548 548 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 RAB28P51157 221 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 OR1D5P58170 312 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 SPATS1Q496A3 300 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 SAMD4BQ5PRF9 694 aaKnown RBP12.92□□□□□ -0.34
LIMS1-204ENST00000409441 PERM1Q5SV97 790 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 PAOXQ6QHF9 649 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 RNF111Q6ZNA4 994 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 MBOAT1Q6ZNC8 495 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 AMIGO1Q86WK6 493 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 KBTBD2Q8IY47 623 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 PQLC1Q8N2U9 271 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 RAB42Q8N4Z0 105 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 IFI44Q8TCB0 444 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 UBTD2Q8WUN7 234 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 IL17FQ96PD4 163 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 HOPXQ9BPY8 73 aaPredicted RBP12.92□□□□□ -0.34
LIMS1-204ENST00000409441 KLHL4Q9C0H6 718 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 YY1AP1Q9H869 796 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 TMEM181Q9P2C4 612 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 ICKQ9UPZ9 632 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 ANKRD12Q6UB98 2062 aa12.92□□□□□ -0.34
LIMS1-204ENST00000409441 GOLGA4Q13439 2230 aaKnown RBP12.92□□□□□ -0.34
LIMS1-204ENST00000409441 LILRA5A6NI73 299 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 TM4SF5O14894 197 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ZW10O43264 779 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 UBXN7O94888 489 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ANXA5P08758 320 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 TYRP1P17643 537 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 AMD1P17707 334 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ACP1P24666 158 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 SHMT2P34897 504 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 HSD17B2P37059 387 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ERVK-8P63133 956 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 CDKL1Q00532 357 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 FOXM1Q08050 763 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 TRIM25Q14258 630 aaKnown RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 NR1D2Q14995 579 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ARHGAP19Q14CB8 494 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 RPS6KA2Q15349 733 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 TRIP6Q15654 476 aaKnown RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 CDKL4Q5MAI5 379 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 IZUMO2Q6UXV1 221 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 RNF165Q6ZSG1 346 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 PDSS2Q86YH6 399 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 C2orf73Q8N5S3 287 aaPredicted RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 LMNTD1Q8N9Z9 388 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 HIPK4Q8NE63 616 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ZNF480Q8WV37 535 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 NR1H4Q96RI1 486 aaPredicted RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 EGFL8Q99944 293 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 CCDC3Q9BQI4 270 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 BRINP2Q9C0B6 783 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 AIG1Q9NVV5 245 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 GID8Q9NWU2 228 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 OR6C2Q9NZP2 312 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 STOX2Q9P2F5 926 aaPredicted RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 CD300AQ9UGN4 299 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ZNF225Q9UK10 706 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 PTBP2Q9UKA9 531 aaKnown RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 BTRCQ9Y297 605 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 GPR45Q9Y5Y3 372 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 A0A1B0GTL3 188 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 OR6C74A6NCV1 312 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 E7ENX8 843 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 BTN3A3O00478 584 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ANGPT2O15123 496 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 OR4F21O95013 312 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 OTCP00480 354 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 PRDX3P30048 256 aaKnown RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 PKLRP30613 574 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 PNLIPRP1P54315 467 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 EPHA4P54764 986 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 MS4A2Q01362 244 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 GTF2H2Q13888 395 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 CYP2A13Q16696 494 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ZXDCQ2QGD7 858 aaPredicted RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 AMZ1Q400G9 498 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 PDCD4Q53EL6 469 aaKnown RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 OGFRL1Q5TC84 451 aaPredicted RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 IRAK1BP1Q5VVH5 260 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 NKAIN2Q5VXU1 208 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 SULT1C3Q6IMI6 304 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 GTF2H2CQ6P1K8 395 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 AGTRAPQ6RW13 159 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 CATSPER1Q8NEC5 780 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 DEFB124Q8NES8 71 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 BHLHE22Q8NFJ8 381 aaPredicted RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 OR9I1Q8NGQ6 314 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 OR2L8Q8NGY9 312 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms