RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ZFYVE21Q9BQ24 234 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 NUF2Q9BZD4 464 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 PDE7BQ9NP56 450 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 FARSBQ9NSD9 589 aaKnown RBP17.31■□□□□ 0.36
SDC1-203ENST00000403076 DCTN4Q9UJW0 460 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 HEATR5BQ9P2D3 2071 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 FAM186AA6NE01 2351 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 DMDP11532 3685 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 TRPC5OSA6NMA1 111 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 D6RAR5 112 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 NTN3O00634 580 aaPredicted RBP17.31■□□□□ 0.36
SDC1-203ENST00000403076 PIP5K1BO14986 540 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 CTSVO60911 334 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 LINC00032P0C843 101 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 BCL6P41182 706 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 AQP5P55064 265 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 CYP4F2P78329 520 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 ABRAXAS2Q15018 415 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 IMPG1Q17R60 797 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 ZC3H12BQ5HYM0 836 aaKnown RBP17.31■□□□□ 0.36
SDC1-203ENST00000403076 PHF19Q5T6S3 580 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 FBXO42Q6P3S6 717 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.31■□□□□ 0.36
SDC1-203ENST00000403076 MFSD9Q8NBP5 474 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 HUS1BQ8NHY5 278 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 N4BP2L2Q92802 583 aaPredicted RBP17.31■□□□□ 0.36
SDC1-203ENST00000403076 HBEGFQ99075 208 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 ELAC2Q9BQ52 826 aaKnown RBP17.31■□□□□ 0.36
SDC1-203ENST00000403076 ADGRE2Q9UHX3 823 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 IGHV5-10-1A0A0J9YXX1 117 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 TOX3O15405 576 aaPredicted RBP17.3■□□□□ 0.36
SDC1-203ENST00000403076 DIAPH2O60879 1101 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 HSD11B2P80365 405 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 RELAQ04206 551 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 BTKQ06187 659 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 TMTC4Q5T4D3 741 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 C10orf62Q5T681 223 aaPredicted RBP17.3■□□□□ 0.36
SDC1-203ENST00000403076 ADNP2Q6IQ32 1131 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 KMT5CQ86Y97 462 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 RNF175Q8N4F7 328 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 ANKRD53Q8N9V6 530 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 WDR20Q8TBZ3 569 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 RERGQ96A58 199 aaPredicted RBP17.3■□□□□ 0.36
SDC1-203ENST00000403076 THAP11Q96EK4 314 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 CCDC74BQ96LY2 380 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 FCRL4Q96PJ5 515 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 FAM60AQ9NP50 221 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 ZFP69BQ9UJL9 534 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 PCDHGA4Q9Y5G9 962 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 PTGDR2Q9Y5Y4 395 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 WDR87Q6ZQQ6 2873 aa17.3■□□□□ 0.36
SDC1-203ENST00000403076 A0A0G2JND7 137 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 SH3BGRLO75368 114 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 EIF2S1P05198 315 aaKnown RBP17.29■□□□□ 0.36
SDC1-203ENST00000403076 THRAP10827 490 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 SERPINB1P30740 379 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 AHRP35869 848 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 PIK3CBP42338 1070 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 DEFB110Q30KQ9 67 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 VWA5B1Q5TIE3 1220 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 CGB2Q6NT52 195 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 RBM44Q6ZP01 1051 aaKnown RBP17.29■□□□□ 0.36
SDC1-203ENST00000403076 RNF44Q7L0R7 432 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 TRPV3Q8NET8 790 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 RFWD2Q8NHY2 731 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 ZNF473Q8WTR7 871 aaKnown RBP17.29■□□□□ 0.36
SDC1-203ENST00000403076 USP7Q93009 1102 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 C19orf60Q96EN9 201 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 CCT8L2Q96SF2 557 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 CCT7Q99832 543 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 SARGQ9BW04 601 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 RHBGQ9H310 441 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 TUBB1Q9H4B7 451 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 SEMA5BQ9P283 1151 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 PDP2Q9P2J9 529 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 PILRAQ9UKJ1 303 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 TSC22D4Q9Y3Q8 395 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 PCDHGA1Q9Y5H4 931 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 AP1M2Q9Y6Q5 423 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 PTPRZ1P23471 2315 aaPredicted RBP17.29■□□□□ 0.36
SDC1-203ENST00000403076 FRYLO94915 3013 aa17.29■□□□□ 0.36
SDC1-203ENST00000403076 MAGEB17A8MXT2 336 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 AGRPO00253 132 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 SLC28A1O00337 649 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 STATHP02808 62 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 JUNP05412 331 aaKnown RBP17.28■□□□□ 0.36
SDC1-203ENST00000403076 NELFEP18615 380 aaKnown RBP17.28■□□□□ 0.36
SDC1-203ENST00000403076 CSRP1P21291 193 aaKnown RBP17.28■□□□□ 0.36
SDC1-203ENST00000403076 GSTM2P28161 218 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 RPS13P62277 151 aaKnown RBP17.28■□□□□ 0.36
SDC1-203ENST00000403076 ZNF33BQ06732 778 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 ARHGAP22Q7Z5H3 698 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 GLRX5Q86SX6 157 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 ASPGQ86U10 573 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 MCATQ8IVS2 390 aaKnown RBP17.28■□□□□ 0.36
SDC1-203ENST00000403076 DNAJC22Q8N4W6 341 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 GBP7Q8N8V2 638 aaPredicted RBP17.28■□□□□ 0.36
SDC1-203ENST00000403076 RCBTB1Q8NDN9 531 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 SLC13A3Q8WWT9 602 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 KLHL6Q8WZ60 621 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms