RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 HSPBAP1Q96EW2 488 aa7□□□□□ -1.29
UPF2-203ENST00000397053 SUSD3Q96L08 255 aa7□□□□□ -1.29
UPF2-203ENST00000397053 LENG8Q96PV6 779 aaPredicted RBP7□□□□□ -1.29
UPF2-203ENST00000397053 TUBGCP5Q96RT8 1024 aa7□□□□□ -1.29
UPF2-203ENST00000397053 NODALQ96S42 347 aa7□□□□□ -1.29
UPF2-203ENST00000397053 CHIAQ9BZP6 476 aa7□□□□□ -1.29
UPF2-203ENST00000397053 LRRC4CQ9HCJ2 640 aa7□□□□□ -1.29
UPF2-203ENST00000397053 PPP4R1LQ9P1A2 415 aa7□□□□□ -1.29
UPF2-203ENST00000397053 PCDHB10Q9UN67 800 aa7□□□□□ -1.29
UPF2-203ENST00000397053 SLC22A14Q9Y267 594 aa7□□□□□ -1.29
UPF2-203ENST00000397053 PCDHB14Q9Y5E9 798 aa7□□□□□ -1.29
UPF2-203ENST00000397053 A0A0G2JLL6 359 aaPredicted RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 LRRC10BA6NIK2 292 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 GRXCR1A8MXD5 290 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 RTCAO00442 366 aaKnown RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 VILLO15195 856 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 SCO2O43819 266 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 OR2B3O76000 313 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 C8orf89P0DMQ9 161 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 UQCRC1P31930 480 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 FASLGP48023 281 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 XKP51811 444 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 VSX2P58304 361 aaPredicted RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 S100A10P60903 97 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 HNRNPKP61978 463 aaKnown RBP eCLIP6.99□□□□□ -1.29
UPF2-203ENST00000397053 HMGCS1Q01581 520 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 FGL2Q14314 439 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 PLGLAQ15195 96 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 IQCCQ4KMZ1 466 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 SPIN4Q56A73 249 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 ESCO2Q56NI9 601 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 KIAA0895LQ68EN5 471 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 PRRT2Q7Z6L0 340 aaPredicted RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 CLNKQ7Z7G1 428 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 P2RY8Q86VZ1 359 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 PAQR7Q86WK9 346 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 HORMAD2Q8N7B1 307 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 CNTD1Q8N815 330 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 OR56A1Q8NGH5 318 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 OR5L2Q8NGL0 311 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 DNAJB8Q8NHS0 232 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 SPOCK2Q92563 424 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 TGM7Q96PF1 710 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 CD180Q99467 661 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 GATA5Q9BWX5 397 aaPredicted RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 HHATLQ9HCP6 504 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 AASSQ9UDR5 926 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 APOBEC3BQ9UH17 382 aaKnown RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 BAIAP2Q9UQB8 552 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 ARL5AQ9Y689 179 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 NUMA1Q14980 2115 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 PTPRMP28827 1452 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 ZNF860A6NHJ4 632 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 BRINP1O60477 761 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 EDF1O60869 148 aaKnown RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 PDYNP01213 254 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 C4BPAP04003 597 aaKnown RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 CFL1P23528 166 aaKnown RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 S100A2P29034 98 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 MAGEA2P43356 314 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 ST3GAL3Q11203 375 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 ABRAXAS2Q15018 415 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 NKAPLQ5M9Q1 402 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 FSTL4Q6MZW2 842 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 C22orf39Q6P5X5 142 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 NLGN4XQ8N0W4 816 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 OR8H1Q8NGG4 311 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 ALG3Q92685 438 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 GCDHQ92947 438 aaPredicted RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 CCDC86Q9H6F5 360 aaKnown RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 FBRSL1Q9HCM7 1045 aaKnown RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 AMBNQ9NP70 447 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 SLAMF7Q9NQ25 335 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 MED11Q9P086 117 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 SH3BGRL2Q9UJC5 107 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 MAFBQ9Y5Q3 323 aaPredicted RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 MEGF6O75095 1541 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 C2orf92A0A1B0GVN3 265 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 ANKRD34BA5PLL1 514 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 FABP12A6NFH5 140 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 MAP2K7O14733 419 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 CDC123O75794 336 aaPredicted RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 H1F0P07305 194 aaKnown RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 FUT4P22083 530 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 KCNQ1P51787 676 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 MAZP56270 477 aaKnown RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 MALLQ13021 153 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 SYCE2Q6PIF2 218 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 PAQR3Q6TCH7 311 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 RBM44Q6ZP01 1051 aaKnown RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 C12orf76Q8N812 135 aaPredicted RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 C15orf40Q8WUR7 153 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 JPH3Q8WXH2 748 aaPredicted RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 PKP4Q99569 1192 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 LPAR4Q99677 370 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.99□□□□□ -1.29
UPF2-203ENST00000397053 PPP1R14DQ9NXH3 145 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 VNN3Q9NY84 501 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 RBPJLQ9UBG7 517 aa6.99□□□□□ -1.29
UPF2-203ENST00000397053 GHRLQ9UBU3 117 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms