RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 STX16-NPEPL1H3BU86 382 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 GAPDHSO14556 408 aaPredicted RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 STX16O14662 325 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 AREL1O15033 823 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 PHGDHO43175 533 aaKnown RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 AP1G1O43747 822 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 KLK8O60259 260 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 KERAO60938 352 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 DNAJC6O75061 913 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 IPO13O94829 963 aaKnown RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 AGFG2O95081 481 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 RECKO95980 971 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 ALPIP09923 528 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 PIRTP0C851 137 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 GPR89BP0CG08 455 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 RALBP11234 206 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 FGF3P11487 239 aaPredicted RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 NEFHP12036 1026 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 BPIP17213 487 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 ITIH1P19827 911 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 LHCGRP22888 699 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 XPAP23025 273 aaPredicted RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 CD82P27701 267 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 SPINT3P49223 89 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 RGS4P49798 205 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 DPTQ07507 201 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 PRKAA1Q13131 559 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 STX3Q13277 289 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 RCN2Q14257 317 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 SLC9A5Q14940 896 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 CHI3L2Q15782 390 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 SH2D4BQ5SQS7 431 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 LDLRAP1Q5SW96 308 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 FAM182AQ5T1J6 154 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 HENMT1Q5T8I9 393 aaKnown RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 SEL1L3Q68CR1 1132 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 ZNF549Q6P9A3 640 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 NEK10Q6ZWH5 1172 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 ADAMTSL2Q86TH1 951 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 TICAM1Q8IUC6 712 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 CEP97Q8IW35 865 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 PIANPQ8IYJ0 282 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 CARFQ8N187 725 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 FSTL5Q8N475 847 aaPredicted RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 AFAP1L2Q8N4X5 818 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 DDHD1Q8NEL9 900 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 OR6K2Q8NGY2 324 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 C9orf43Q8TAL5 461 aaPredicted RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 STAG3L4Q8TBR4 150 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 ZBTB9Q96C00 473 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 EID2BQ96D98 161 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 L3HYPDHQ96EM0 354 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 RCC1LQ96I51 464 aaKnown RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 CNDP1Q96KN2 507 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 BMFQ96LC9 184 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 KLHL32Q96NJ5 620 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 GFM1Q96RP9 751 aaKnown RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 COPS8Q99627 209 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 OLFM1Q99784 485 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 DRC3Q9H069 523 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 ACTR5Q9H9F9 607 aaPredicted RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 CAB39LQ9H9S4 337 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 EML4Q9HC35 981 aaKnown RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 MLXIPLQ9NP71 852 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 XPR1Q9UBH6 696 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 SPASTQ9UBP0 616 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 B4GALT6Q9UBX8 382 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 APOBEC3BQ9UH17 382 aaKnown RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 TRMT6Q9UJA5 497 aaKnown RBP6.75□□□□□ -1.33
VPS13A-201ENST00000355766 MED16Q9Y2X0 877 aa6.75□□□□□ -1.33
VPS13A-201ENST00000355766 LRBAP50851 2863 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 CCDC78A2IDD5 438 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 POM121BA6NF01 834 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 C16orf96A6NNT2 1141 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 E5RI56 91 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 SLC22A2O15244 555 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 SMIM24O75264 130 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 ATP5HO75947 161 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 RPLP0P05388 317 aaKnown RBP6.74□□□□□ -1.33
VPS13A-201ENST00000355766 CTSLP07711 333 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 ENO2P09104 434 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-201ENST00000355766 CCDC166P0CW27 439 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 TPBGLP0DKB5 382 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 CD1DP15813 335 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 POU3F2P20265 443 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-201ENST00000355766 BGNP21810 368 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 ETV5P41161 510 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 RABIFP47224 123 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 SLC1A6P48664 564 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 NUMBP49757 651 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 CDKN2DP55273 166 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 IL2P60568 153 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 ABCE1P61221 599 aaKnown RBP6.74□□□□□ -1.33
VPS13A-201ENST00000355766 PLOD1Q02809 727 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-201ENST00000355766 RALGDSQ12967 914 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 CDC16Q13042 620 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 SP140Q13342 867 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 FGL2Q14314 439 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 SEMA3AQ14563 771 aa6.74□□□□□ -1.33
VPS13A-201ENST00000355766 TMEM52BQ4KMG9 183 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms