RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 CTBP1Q13363 440 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 TPSAB1Q15661 275 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 LCN1P1Q5VSP4 162 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 GPR153Q6NV75 609 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 EIF3MQ7L2H7 374 aaKnown RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 KCNMB4Q86W47 210 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 OR4N4Q8N0Y3 316 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 BMPERQ8N8U9 685 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 FBLIM1Q8WUP2 373 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 MTFMTQ96DP5 389 aaKnown RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 ZNF251Q9BRH9 671 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 BTBD1Q9H0C5 482 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 MED28Q9H204 178 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 BIN3Q9NQY0 253 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 THUMPD1Q9NXG2 353 aaKnown RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 SLCO1C1Q9NYB5 712 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 ACAD8Q9UKU7 415 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 A0A1B0GTQ1 180 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 A0A1W2PQL4 384 aaPredicted RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 HNRNPDLO14979 420 aaKnown RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 SCAMP1O15126 338 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 SLC16A6O15403 523 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 TXNL1O43396 289 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 ATP5F1P24539 256 aaPredicted RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 CTNNB1P35222 781 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 MAZP56270 477 aaKnown RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 YWHAEP62258 255 aaKnown RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 SNRPEP62304 92 aaKnown RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 NRG1Q02297 640 aaPredicted RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 MXD4Q14582 209 aaPredicted RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 TRIQKQ629K1 86 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 LRRC66Q68CR7 880 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 SLC27A4Q6P1M0 643 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 TRMT11Q7Z4G4 463 aaKnown RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 TTC29Q8NA56 475 aaPredicted RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 OR5B17Q8NGF7 314 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 BRI3BPQ8WY22 251 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 ARL5BQ96KC2 179 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 TMEM175Q9BSA9 504 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 NIFKQ9BYG3 293 aaKnown RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 EVA1AQ9H8M9 152 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 RAD18Q9NS91 495 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 ARHGAP28Q9P2N2 729 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 EIF2B4Q9UI10 523 aaKnown RBP9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 CLCA2Q9UQC9 943 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 CMAHPQ9Y471 501 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 IRAK3Q9Y616 596 aa9.36□□□□□ -0.91
PTCHD4-201ENST00000339488 ZNF541Q9H0D2 1346 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 A0A1B0GTL3 188 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 A8MT66 165 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 BBIP1A8MTZ0 92 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 ABCD4O14678 606 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 LRRTM2O43300 516 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 SELENOFO60613 162 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 PDGFRAP16234 1089 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 CD72P21854 359 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 LHCGRP22888 699 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 PTBP1P26599 531 aaKnown RBP eCLIP9.35□□□□□ -0.912e-6■■■□□ 16.1
PTCHD4-201ENST00000339488 GSTM5P46439 218 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 FNTBP49356 437 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 ATXN1P54253 815 aaKnown RBP9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 EMC2Q15006 297 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 MICAQ29983 383 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 ZNF528Q3MIS6 628 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 GLYR1Q49A26 553 aaPredicted RBP9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 CARD16Q5EG05 197 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 PABPC1L2AQ5JQF8 200 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 FAM102AQ5T9C2 384 aaPredicted RBP9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 ZNF605Q86T29 641 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 LRRC17Q8N6Y2 441 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 DNAAF3Q8N9W5 541 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 SETD9Q8NE22 299 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 C19orf18Q8NEA5 215 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 SNX33Q8WV41 574 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 CRYGNQ8WXF5 182 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 PFDN5Q99471 154 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 PKMYT1Q99640 499 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 MRPL45Q9BRJ2 306 aaKnown RBP9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 MED18Q9BUE0 208 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 MND1Q9BWT6 205 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 TRIM54Q9BYV2 358 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 CHMP1AQ9HD42 196 aaPredicted RBP9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 MORF4L1Q9UBU8 362 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 MID2Q9UJV3 735 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 COL24A1Q17RW2 1714 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 TAF1P21675 1872 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 GSTA4O15217 222 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 ZBTB24O43167 697 aaPredicted RBP9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 LYRM1O43325 122 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 TSPAN12O95859 305 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 IGHV2-70P01814 119 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 ALPIP09923 528 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 ALDH9A1P49189 494 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 RIDAP52758 137 aaKnown RBP9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 SNX16P57768 344 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 FOXK2Q01167 660 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 TLE2Q04725 743 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 KLHL22Q53GT1 634 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 SLC25A25Q6KCM7 469 aa9.35□□□□□ -0.91
PTCHD4-201ENST00000339488 XRRA1Q6P2D8 792 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms