RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 AXIN1O15169 862 aa17.97■□□□□ 0.47
PCDH1-201ENST00000287008 CAPN5O15484 640 aaPredicted RBP17.97■□□□□ 0.47
PCDH1-201ENST00000287008 TRAPPC6AO75865 159 aa17.97■□□□□ 0.47
PCDH1-201ENST00000287008 OPN1SWP03999 348 aa17.97■□□□□ 0.47
PCDH1-201ENST00000287008 SLC18A2Q05940 514 aa17.97■□□□□ 0.47
PCDH1-201ENST00000287008 PDSS1Q5T2R2 415 aa17.97■□□□□ 0.47
PCDH1-201ENST00000287008 SATB2Q9UPW6 733 aa17.97■□□□□ 0.47
PCDH1-201ENST00000287008 VSTM5A8MXK1 200 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 SSNA1O43805 119 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 OR1I1O60431 355 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 C6P13671 934 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 ZNF267Q14586 743 aaPredicted RBP17.96■□□□□ 0.47
PCDH1-201ENST00000287008 PON2Q15165 354 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 RGS21Q2M5E4 152 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 PERM1Q5SV97 790 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 CAND1Q86VP6 1230 aaKnown RBP17.96■□□□□ 0.47
PCDH1-201ENST00000287008 NPAS3Q8IXF0 933 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 APCDD1Q8J025 514 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 CHST4Q8NCG5 386 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 GRHL3Q8TE85 626 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 NODALQ96S42 347 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 CCDC182A6NF36 153 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 PRODHO43272 600 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 CHRM1P11229 460 aaPredicted RBP17.96■□□□□ 0.47
PCDH1-201ENST00000287008 GSTT1P30711 240 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 HMGCLP35914 325 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 TGFBR2P37173 567 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 CBX5P45973 191 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 KCNJ5P48544 419 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 VSX2P58304 361 aaPredicted RBP17.96■□□□□ 0.47
PCDH1-201ENST00000287008 OR10G2Q8NGC3 310 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 LYARQ9NX58 379 aaKnown RBP17.96■□□□□ 0.47
PCDH1-201ENST00000287008 RAB26Q9ULW5 256 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 SPIN1Q9Y657 262 aaPredicted RBP17.96■□□□□ 0.47
PCDH1-201ENST00000287008 TRBC2A0A5B9 178 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 ARHGEF33A8MVX0 844 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 SEMA4FO95754 770 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 G6PDP11413 515 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 CST5P28325 142 aaPredicted RBP17.96■□□□□ 0.47
PCDH1-201ENST00000287008 GFOD2Q3B7J2 385 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 KCTD21Q4G0X4 260 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 C11orf24Q96F05 449 aaPredicted RBP17.96■□□□□ 0.47
PCDH1-201ENST00000287008 ACTL8Q9H568 366 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 FARSBQ9NSD9 589 aaKnown RBP17.96■□□□□ 0.47
PCDH1-201ENST00000287008 WDR45Q9Y484 360 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 H1F0P07305 194 aaKnown RBP17.96■□□□□ 0.47
PCDH1-201ENST00000287008 EMX2Q04743 252 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 SPANXN4Q5MJ08 99 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 USP30Q70CQ3 517 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 OR4K14Q8NGD5 310 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 PTCHD1Q96NR3 888 aa17.96■□□□□ 0.47
PCDH1-201ENST00000287008 ADAMTSL3P82987 1691 aa17.96■□□□□ 0.46
PCDH1-201ENST00000287008 ZNF860A6NHJ4 632 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 KLF11O14901 512 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 PSIP1O75475 530 aaKnown RBP17.95■□□□□ 0.46
PCDH1-201ENST00000287008 CD70P32970 193 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 PSMD7P51665 324 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 ABHD18Q0P651 414 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 SYT16Q17RD7 645 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 C10orf82Q8WW14 230 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 SLC17A9Q9BYT1 436 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 PCDHAC1Q9H158 963 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 CLEC4AQ9UMR7 237 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 MID1O15344 667 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 AHSA1O95433 338 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 HEXBP07686 556 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 LEPRP48357 1165 aaKnown RBP17.95■□□□□ 0.46
PCDH1-201ENST00000287008 CDKN1CP49918 316 aaPredicted RBP17.95■□□□□ 0.46
PCDH1-201ENST00000287008 ADARP55265 1226 aaKnown RBP17.95■□□□□ 0.46
PCDH1-201ENST00000287008 MEF2AQ02078 507 aaPredicted RBP17.95■□□□□ 0.46
PCDH1-201ENST00000287008 CD47Q08722 323 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 PHRF1Q9P1Y6 1649 aaKnown RBP17.95■□□□□ 0.46
PCDH1-201ENST00000287008 TPD52L2O43399 206 aaKnown RBP17.95■□□□□ 0.46
PCDH1-201ENST00000287008 CPNE3O75131 537 aaKnown RBP17.95■□□□□ 0.46
PCDH1-201ENST00000287008 TRIM3O75382 744 aaPredicted RBP17.95■□□□□ 0.46
PCDH1-201ENST00000287008 C1GALT1C1LP0DN25 315 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 PRKAR1AP10644 381 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 ABATP80404 500 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 KLHL22Q53GT1 634 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 C6orf52Q5T4I8 152 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 DNM1P34Q6PK57 102 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 LGI4Q8N135 537 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 RASGEF1AQ8N9B8 481 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 PKP4Q99569 1192 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 FHP07954 510 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 MTHFD1P11586 935 aaKnown RBP17.95■□□□□ 0.46
PCDH1-201ENST00000287008 PER3P56645 1201 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 ZNF630Q2M218 657 aaPredicted RBP17.95■□□□□ 0.46
PCDH1-201ENST00000287008 ZNF542PQ5EBM4 170 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 TOP1MTQ969P6 601 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 PRTFDC1Q9NRG1 225 aa17.95■□□□□ 0.46
PCDH1-201ENST00000287008 SLC16A5O15375 505 aa17.94■□□□□ 0.46
PCDH1-201ENST00000287008 ACRV1P26436 265 aa17.94■□□□□ 0.46
PCDH1-201ENST00000287008 ACVR2AP27037 513 aa17.94■□□□□ 0.46
PCDH1-201ENST00000287008 VLDLRP98155 873 aa17.94■□□□□ 0.46
PCDH1-201ENST00000287008 ATG14Q6ZNE5 492 aa17.94■□□□□ 0.46
PCDH1-201ENST00000287008 PIGWQ7Z7B1 504 aa17.94■□□□□ 0.46
PCDH1-201ENST00000287008 OR5M3Q8NGP4 307 aa17.94■□□□□ 0.46
PCDH1-201ENST00000287008 LDAHQ9H6V9 325 aa17.94■□□□□ 0.46
PCDH1-201ENST00000287008 DAPL1A0PJW8 107 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms