RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 A8MUI8 341 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 PRSS44E7EML9 344 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 PCDH17O14917 1159 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 PHF2O75151 1096 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 PAMP19021 973 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 FDXRP22570 491 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 MST1P26927 711 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 HSD17B2P37059 387 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 PMP22Q01453 160 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 CACNA1DQ01668 2161 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 ZNF33BQ06732 778 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 THOC5Q13769 683 aaKnown RBP15.3■□□□□ 0.04
CLN3-246ENST00000636228 MFSD4BQ5TF39 518 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 GARNL3Q5VVW2 1013 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 TTC27Q6P3X3 843 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 TMEM205Q6UW68 189 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 GFRALQ6UXV0 394 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 LANCL3Q6ZV70 420 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 IMMP1LQ96LU5 166 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 GPR21Q99679 349 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 UNKQ9C0B0 810 aaKnown RBP15.3■□□□□ 0.04
CLN3-246ENST00000636228 INTS10Q9NVR2 710 aaKnown RBP15.3■□□□□ 0.04
CLN3-246ENST00000636228 UTP6Q9NYH9 597 aaKnown RBP15.3■□□□□ 0.04
CLN3-246ENST00000636228 STMN3Q9NZ72 180 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 SAMD15Q9P1V8 674 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 DOCK10Q96BY6 2186 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 NUP210LQ5VU65 1888 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 CRYBG3Q68DQ2 2970 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 TRGV8A0A0C4DH27 118 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 ZNF839A8K0R7 811 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 GFYI3L273 518 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 KIF5CO60282 957 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 SEC24DO94855 1032 aaPredicted RBP15.29■□□□□ 0.04
CLN3-246ENST00000636228 UNC5CO95185 931 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 KRT14P02533 472 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 C8orf89P0DMQ9 161 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 GRNP28799 593 aaKnown RBP15.29■□□□□ 0.04
CLN3-246ENST00000636228 TNFRSF8P28908 595 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 IMPA1P29218 277 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 SLC1A2P43004 574 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 AVPR1BP47901 424 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 ABATP80404 500 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 SARNPP82979 210 aaKnown RBP15.29■□□□□ 0.04
CLN3-246ENST00000636228 TTLL9Q3SXZ7 439 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 FCRLBQ6BAA4 426 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 NEK10Q6ZWH5 1172 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 UBE2R2Q712K3 238 aaPredicted RBP15.29■□□□□ 0.04
CLN3-246ENST00000636228 PIWIL4Q7Z3Z4 852 aaKnown RBP15.29■□□□□ 0.04
CLN3-246ENST00000636228 CPNE9Q8IYJ1 553 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 SLC34A3Q8N130 599 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 AGGF1Q8N302 714 aaeCLIP15.29■□□□□ 0.04
CLN3-246ENST00000636228 RELTQ969Z4 430 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 CCDC138Q96M89 665 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 VN1R1Q9GZP7 353 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 HCN3Q9P1Z3 774 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 COPG2Q9UBF2 871 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 SH3BGRL2Q9UJC5 107 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 SH2B3Q9UQQ2 575 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 CSMD1Q96PZ7 3565 aa15.29■□□□□ 0.04
CLN3-246ENST00000636228 POLEQ07864 2286 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 ZCWPW2A0A1B0GU75 182 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 FAM237BA0A1B0GVD1 139 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 FEZF1A0PJY2 475 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 SDR42E2A6NKP2 422 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 SGK494L7N484 410 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 TXNDC9O14530 226 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 ZBTB14O43829 449 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 HAUS5O94927 633 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 RASAL1O95294 804 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 MPC1LP0DKB6 136 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 IL1RNP18510 177 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 MAGEA6P43360 314 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 MPP1Q00013 466 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 FAM53BQ14153 422 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 NDUFA9Q16795 377 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 MINDY4Q4G0A6 757 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 ABHD17BQ5VST6 288 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 RIPOR1Q6ZS17 1223 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 VN1R4Q7Z5H5 301 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 FBXO15Q8NCQ5 510 aaPredicted RBP15.28■□□□□ 0.04
CLN3-246ENST00000636228 CD200R1Q8TD46 325 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 MS4A14Q96JA4 679 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 CYTH2Q99418 400 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 TUBB6Q9BUF5 446 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 CCDC68Q9H2F9 335 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 C20orf96Q9NUD7 363 aaPredicted RBP15.28■□□□□ 0.04
CLN3-246ENST00000636228 ADAMTS6Q9UKP5 1117 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 ENTPD4Q9Y227 616 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 VPS9D1Q9Y2B5 631 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 DHRS7Q9Y394 339 aa15.28■□□□□ 0.04
CLN3-246ENST00000636228 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.27■□□□□ 0.04
CLN3-246ENST00000636228 OR5H15A6NDH6 313 aa15.27■□□□□ 0.04
CLN3-246ENST00000636228 HNRNPRO43390 633 aaKnown RBP15.27■□□□□ 0.04
CLN3-246ENST00000636228 PRAMEF2O60811 474 aa15.27■□□□□ 0.04
CLN3-246ENST00000636228 ICAM2P13598 275 aa15.27■□□□□ 0.04
CLN3-246ENST00000636228 SKIV2L2P42285 1042 aaKnown RBP15.27■□□□□ 0.04
CLN3-246ENST00000636228 BTBD16Q32M84 506 aa15.27■□□□□ 0.04
CLN3-246ENST00000636228 TMEM207Q6UWW9 146 aa15.27■□□□□ 0.04
CLN3-246ENST00000636228 MBOAT1Q6ZNC8 495 aa15.27■□□□□ 0.04
CLN3-246ENST00000636228 CPEB2Q7Z5Q1 589 aaKnown RBP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms