RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 LAPTM4BQ86VI4 370 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 LRRC56Q8IYG6 542 aaPredicted RBP17.49■□□□□ 0.39
CLN3-241ENST00000635861 RASGEF1CQ8N431 466 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 MYRIPQ8NFW9 859 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 GABPB2Q8TAK5 448 aaPredicted RBP17.49■□□□□ 0.39
CLN3-241ENST00000635861 PSMF1Q92530 271 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 NAP1L3Q99457 506 aaPredicted RBP17.49■□□□□ 0.39
CLN3-241ENST00000635861 YIPF2Q9BWQ6 316 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 PCBD2Q9H0N5 130 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 OLAHQ9NV23 265 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 TMEM184CQ9NVA4 438 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 PCYOX1Q9UHG3 505 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 PYCARDQ9ULZ3 195 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 MRPS2Q9Y399 296 aaKnown RBP17.49■□□□□ 0.39
CLN3-241ENST00000635861 KCNE1BA0A087WTH5 132 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 FOXS1O43638 330 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 KIF5CO60282 957 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 MYBL2P10244 700 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 MAGEA3P43357 314 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 AVPR1BP47901 424 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 VPS41P49754 854 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 TNFSF10P50591 281 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 LONRF1Q17RB8 773 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 ANKRD22Q5VYY1 191 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 OR1N1Q8NGS0 311 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 GIMAP7Q8NHV1 300 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 BRIX1Q8TDN6 353 aaKnown RBP17.48■□□□□ 0.39
CLN3-241ENST00000635861 THAP11Q96EK4 314 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 PBKQ96KB5 322 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 TUBB6Q9BUF5 446 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 FAM129AQ9BZQ8 928 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 ZNF700Q9H0M5 742 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 PTGFRNQ9P2B2 879 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 MED16Q9Y2X0 877 aa17.48■□□□□ 0.39
CLN3-241ENST00000635861 A0A1B0GUH1 482 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 WFS1O76024 890 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 SYF2O95926 243 aaKnown RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 STSP08842 583 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 SLC1A2P43004 574 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 RPS15AP62244 130 aaKnown RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 CTBP1Q13363 440 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 CYP1B1Q16678 543 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 THEMIS2Q5TEJ8 643 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 UGT3A1Q6NUS8 523 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 CYHR1Q6ZMK1 362 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 ADCK2Q7Z695 626 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 DENND6AQ8IWF6 608 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 CD200R1Q8TD46 325 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 MCOLN3Q8TDD5 553 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 MAGOHBQ96A72 148 aaKnown RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 SLC30A3Q99726 388 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 FAM167BQ9BTA0 163 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 SYNPO2LQ9H987 977 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 CCDC177Q9NQR7 707 aaPredicted RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 FBXO6Q9NRD1 293 aaPredicted RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 STOX2Q9P2F5 926 aaPredicted RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 ABCA12Q86UK0 2595 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 A0A0A6YYC8 382 aaPredicted RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 I3L1I5 382 aaPredicted RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 HAT1O14929 419 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 LRRTM2O43300 516 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 NSA2O95478 260 aaKnown RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 IMPA1P29218 277 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 EEF1A2Q05639 463 aaKnown RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 CUL1Q13616 776 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 PTK6Q13882 451 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 ZNF324BQ6AW86 544 aaPredicted RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 TTC27Q6P3X3 843 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 ZNF549Q6P9A3 640 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 CCDC137Q6PK04 289 aaKnown RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 UBE2R2Q712K3 238 aaPredicted RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 ZC3H7AQ8IWR0 971 aaKnown RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 PPFIBP2Q8ND30 876 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 CATSPER1Q8NEC5 780 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 METTL21AQ8WXB1 218 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 GPR21Q99679 349 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 MESP1Q9BRJ9 268 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 C19orf25Q9UFG5 118 aaPredicted RBP17.47■□□□□ 0.39
CLN3-241ENST00000635861 TEKT2Q9UIF3 430 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 MKL2Q9ULH7 1088 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 OSGIN2Q9Y236 505 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 PPP2R2CQ9Y2T4 447 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 JRKLQ9Y4A0 524 aa17.47■□□□□ 0.39
CLN3-241ENST00000635861 C8orf89P0DMQ9 161 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 CCND1P24385 295 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 COILP38432 576 aaPredicted RBP17.46■□□□□ 0.39
CLN3-241ENST00000635861 SP140Q13342 867 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 PCOLCEQ15113 449 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 ZRSR2Q15696 482 aaKnown RBP17.46■□□□□ 0.39
CLN3-241ENST00000635861 ZNF787Q6DD87 383 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 PCGF5Q86SE9 256 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 DNAJB8Q8NHS0 232 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 GRK7Q8WTQ7 553 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 NR4A3Q92570 626 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 CCDC138Q96M89 665 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 C20orf96Q9NUD7 363 aaPredicted RBP17.46■□□□□ 0.39
CLN3-241ENST00000635861 FBXO5Q9UKT4 447 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 NEU2Q9Y3R4 380 aa17.46■□□□□ 0.39
CLN3-241ENST00000635861 H7BY64 318 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 P2RX6O15547 441 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms