RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CYP4F2P78329 520 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 ACAP2Q15057 778 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 MUM1Q2TAK8 710 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 NKAIN1Q4KMZ8 207 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 C16orf46Q6P387 395 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 SYVN1Q86TM6 617 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 PLD3Q8IV08 490 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 KCTD4Q8WVF5 259 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 SLC5A11Q8WWX8 675 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 DHRS4Q9BTZ2 278 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 VPS11Q9H270 941 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 IFT80Q9P2H3 777 aaPredicted RBP19.78■□□□□ 0.76
CLN3-240ENST00000631023 FETUBQ9UGM5 382 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 PADI2Q9Y2J8 665 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 SYCE1LA8MT33 242 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 KERAO60938 352 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 WDR47O94967 919 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 SNRPAP09012 282 aaKnown RBP19.77■□□□□ 0.76
CLN3-240ENST00000631023 PRKAR1AP10644 381 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 GGT5P36269 586 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 GMPRP36959 345 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 CDC20Q12834 499 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 ERV3-1Q14264 604 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 NCF4Q15080 339 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 PRTGQ2VWP7 1150 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 GARNL3Q5VVW2 1013 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 CENPLQ8N0S6 344 aaPredicted RBP19.77■□□□□ 0.76
CLN3-240ENST00000631023 ENDOVQ8N8Q3 282 aaKnown RBP19.77■□□□□ 0.76
CLN3-240ENST00000631023 PDPRQ8NCN5 879 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 OR4K1Q8NGD4 311 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 RHEBL1Q8TAI7 183 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 NEIL2Q969S2 332 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 ISL2Q96A47 359 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 CABS1Q96KC9 395 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 UBL7Q96S82 380 aaPredicted RBP19.77■□□□□ 0.76
CLN3-240ENST00000631023 CAPS2Q9BXY5 557 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 NUDT4Q9NZJ9 180 aa19.77■□□□□ 0.76
CLN3-240ENST00000631023 TRIM49D1C9J1S8 452 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 ERVH48-1M5A8F1 160 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 CAPN1P07384 714 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 GNAZP19086 355 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 SLC6A12P48065 614 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 IRF9Q00978 393 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 MLIPQ5VWP3 458 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 ADGRD1Q6QNK2 874 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 FAM198BQ6UWH4 519 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 KLHDC8AQ8IYD2 350 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 CAMKVQ8NCB2 501 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 UBLCP1Q8WVY7 318 aaPredicted RBP19.76■□□□□ 0.75
CLN3-240ENST00000631023 EXT2Q93063 718 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 MTBPQ96DY7 904 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 RUFY1Q96T51 708 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 CDC14AQ9UNH5 594 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 RUVBL1Q9Y265 456 aaKnown RBP19.76■□□□□ 0.75
CLN3-240ENST00000631023 IGSF10Q6WRI0 2623 aa19.76■□□□□ 0.75
CLN3-240ENST00000631023 FEZF1A0PJY2 475 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 STK16O75716 305 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 GDF5P43026 501 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 MAGEA12P43365 314 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 KCNC1P48547 511 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 PRMT9Q6P2P2 845 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 TSNARE1Q96NA8 513 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 ATOH8Q96SQ7 321 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 AIF1LQ9BQI0 150 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 PELI2Q9HAT8 420 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 PTBP2Q9UKA9 531 aaKnown RBP19.75■□□□□ 0.75
CLN3-240ENST00000631023 TCFL5Q9UL49 500 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 ATMQ13315 3056 aa19.75■□□□□ 0.75
CLN3-240ENST00000631023 TRBC2A0A5B9 178 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 SUPT3HB4E1H0 165 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 TAPBPO15533 448 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 SUPT3HO75486 399 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 ONECUT2O95948 504 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 ATXN8OSP0DMR3 200 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 COL6A2P12110 1019 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 RPS18P62269 152 aaKnown RBP19.74■□□□□ 0.75
CLN3-240ENST00000631023 CDC16Q13042 620 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 NDUFA9Q16795 377 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 HKDC1Q2TB90 917 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 C18orf21Q32NC0 220 aaPredicted RBP19.74■□□□□ 0.75
CLN3-240ENST00000631023 CATSPEREQ5SY80 951 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 NXPE4Q6UWF7 544 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 MFSD9Q8NBP5 474 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 MVB12AQ96EY5 273 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 SARGQ9BW04 601 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 EPB41L4BQ9H329 900 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 DNAJC11Q9NVH1 559 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 GPRC5BQ9NZH0 403 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 MED13Q9UHV7 2174 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 IQANK1A0A1B0GTG1 560 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 OR1F1O43749 312 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 H2AFYO75367 372 aaKnown RBP19.74■□□□□ 0.75
CLN3-240ENST00000631023 ALBP02768 609 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 CXCR2P25025 360 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 GLRBP48167 497 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 HSPA7P48741 367 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 COL9A2Q14055 689 aaPredicted RBP19.74■□□□□ 0.75
CLN3-240ENST00000631023 SLC9A5Q14940 896 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 TSNAXIP1Q2TAA8 658 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 TMPRSS11BQ86T26 416 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms