RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ZCWPW2A0A1B0GU75 182 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 MASP2O00187 686 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 PGRMC1O00264 195 aaKnown RBP11.31□□□□□ -0.6
UPF3B-204ENST00000619445 CDK2AP1O14519 115 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 ALOX12BO75342 701 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 NSA2O95478 260 aaKnown RBP11.31□□□□□ -0.6
UPF3B-204ENST00000619445 CRYABP02511 175 aaKnown RBP11.31□□□□□ -0.6
UPF3B-204ENST00000619445 C8GP07360 202 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 IL10P22301 178 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 GRK3P35626 688 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 MAGEA3P43357 314 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 FNTAP49354 379 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 TNFSF10P50591 281 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 Q0VFX4 171 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 SP140Q13342 867 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 NIPAL1Q6NVV3 410 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 CCDC137Q6PK04 289 aaKnown RBP11.31□□□□□ -0.6
UPF3B-204ENST00000619445 TMEM205Q6UW68 189 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 UBE2R2Q712K3 238 aaPredicted RBP11.31□□□□□ -0.6
UPF3B-204ENST00000619445 AMER3Q8N944 861 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.31□□□□□ -0.6
UPF3B-204ENST00000619445 CAMKVQ8NCB2 501 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 OR1N1Q8NGS0 311 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 DNAJB8Q8NHS0 232 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 ZNF700Q9H0M5 742 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 C20orf96Q9NUD7 363 aaPredicted RBP11.31□□□□□ -0.6
UPF3B-204ENST00000619445 TAS2R13Q9NYV9 303 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 TRMT6Q9UJA5 497 aaKnown RBP11.31□□□□□ -0.6
UPF3B-204ENST00000619445 FBXO5Q9UKT4 447 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 MAD1L1Q9Y6D9 718 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 CRYBG3Q68DQ2 2970 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 CPAMD8Q8IZJ3 1885 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 CELSR2Q9HCU4 2923 aa11.31□□□□□ -0.6
UPF3B-204ENST00000619445 ABCA12Q86UK0 2595 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 KRT87PA6NCN2 255 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 E2F3O00716 465 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 SLC16A5O15375 505 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 KLHL18O94889 574 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 MED26O95402 600 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 STSP08842 583 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 C8orf89P0DMQ9 161 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 COILP38432 576 aaPredicted RBP11.3□□□□□ -0.6
UPF3B-204ENST00000619445 SLC1A2P43004 574 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 AGTR2P50052 363 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 CTBP1Q13363 440 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 HKDC1Q2TB90 917 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 ABHD17BQ5VST6 288 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 ANKRD22Q5VYY1 191 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 MTFR2Q6P444 385 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 KIAA0408Q6ZU52 694 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 PCGF5Q86SE9 256 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 LAPTM4BQ86VI4 370 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 C17orf64Q86WR6 236 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 TMEM151BQ8IW70 566 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 DENND6AQ8IWF6 608 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 PPIL6Q8IXY8 311 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 ARHGEF39Q8N4T4 335 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 TBC1D19Q8N5T2 526 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 GPATCH11Q8N954 259 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 CD200R1Q8TD46 325 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 BRIX1Q8TDN6 353 aaKnown RBP11.3□□□□□ -0.6
UPF3B-204ENST00000619445 C8orf44Q96CB5 159 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 GPR21Q99679 349 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 AARSD1Q9BTE6 412 aaKnown RBP11.3□□□□□ -0.6
UPF3B-204ENST00000619445 RUBCNLQ9H714 662 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 FBXO6Q9NRD1 293 aaPredicted RBP11.3□□□□□ -0.6
UPF3B-204ENST00000619445 ABI3Q9P2A4 366 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 PTGFRNQ9P2B2 879 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 GALPQ9UBC7 116 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 MKL2Q9ULH7 1088 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 PPP2R2CQ9Y2T4 447 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 CSAG2Q9Y5P2 127 aa11.3□□□□□ -0.6
UPF3B-204ENST00000619445 A0A0A6YYC8 382 aaPredicted RBP11.29□□□□□ -0.6
UPF3B-204ENST00000619445 H7BY64 318 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 I3L1I5 382 aaPredicted RBP11.29□□□□□ -0.6
UPF3B-204ENST00000619445 HAT1O14929 419 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 LRRTM2O43300 516 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 FOXS1O43638 330 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 NRP2O60462 931 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 MLYCDO95822 493 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 HIST1H2AGP0C0S8 130 aaPredicted RBP11.29□□□□□ -0.6
UPF3B-204ENST00000619445 SLC35G6P0C7Q6 338 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 RNF224P0DH78 156 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 PGAM1P18669 254 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 HIST1H2ADP20671 130 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 IMPA1P29218 277 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 YBX1P67809 324 aaKnown RBP11.29□□□□□ -0.6
UPF3B-204ENST00000619445 CUL1Q13616 776 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 TTC27Q6P3X3 843 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 ZNF549Q6P9A3 640 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 MYO7BQ6PIF6 2116 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 CYHR1Q6ZMK1 362 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 GALNT7Q86SF2 657 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 ZC3H7AQ8IWR0 971 aaKnown RBP11.29□□□□□ -0.6
UPF3B-204ENST00000619445 LRRC56Q8IYG6 542 aaPredicted RBP11.29□□□□□ -0.6
UPF3B-204ENST00000619445 MYO1HQ8N1T3 1032 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 DTWD1Q8N5C7 304 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 GIMAP7Q8NHV1 300 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 PSMF1Q92530 271 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 NR4A3Q92570 626 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms