RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 KLHL42Q9P2K6 505 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 RNF11Q9Y3C5 154 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 TTC3P53804 2025 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 LOC285556D6RIA3 1793 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 A0A1B0GVT2 93 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 FKBP6O75344 327 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 ACSL1P33121 698 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 RPS13P62277 151 aaKnown RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 ACY1Q03154 408 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 TMEM196Q5HYL7 178 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 TCHHL1Q5QJ38 904 aaPredicted RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 IL17RCQ8NAC3 791 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 OR2L2Q8NH16 312 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 FBXO30Q8TB52 745 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 POP5Q969H6 163 aaKnown RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 DUSP26Q9BV47 211 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 ADNPQ9H2P0 1102 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 KLHL31Q9H511 634 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 TREX1Q9NSU2 369 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 WARS2Q9UGM6 360 aaKnown RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 OR52A4PA6NMU1 304 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 NARSO43776 548 aaKnown RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 RFPL1O75677 317 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 SLC25A12O75746 678 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 HIST1H2ABP04908 130 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 GSNP06396 782 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 SLC35E2BP0CK96 405 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 F3P13726 295 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 ADSLP30566 484 aaPredicted RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 WDR4P57081 412 aaKnown RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 NUP107P57740 925 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 OC90Q02509 493 aaPredicted RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 TECRLQ5HYJ1 363 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 FIGLAQ6QHK4 219 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 GK5Q6ZS86 529 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 HIST3H2AQ7L7L0 130 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 C12orf40Q86WS4 652 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 PLD6Q8N2A8 252 aaKnown RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 HIST1H2ACQ93077 130 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 MMABQ96EY8 250 aaPredicted RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 MRGPRX1Q96LB2 322 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 HOPXQ9BPY8 73 aaPredicted RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 SLC12A9Q9BXP2 914 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 EPHA6Q9UF33 1036 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 CFL2Q9Y281 166 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 AGPSO00116 658 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 GNB5O14775 395 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 NUAK1O60285 661 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 SEC24DO94855 1032 aaPredicted RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 ALDOAP04075 364 aaKnown RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 IL6P05231 212 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 MNX1P50219 401 aaPredicted RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 ADPRHP54922 357 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 SMIM11AP58511 58 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 RPS15AP62244 130 aaKnown RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 RPP38P78345 283 aaKnown RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 SYT13Q7L8C5 426 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 PLD3Q8IV08 490 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 EID2Q8N6I1 236 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 ADCY4Q8NFM4 1077 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 SUN3Q8TAQ9 357 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 PPM1MQ96MI6 270 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 SLC6A18Q96N87 628 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 PLA2G2FQ9BZM2 168 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 TRNAU1APQ9NX07 287 aaKnown RBP9.52□□□□□ -0.89
LIG3-216ENST00000593099 CALML5Q9NZT1 146 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 TRPS1Q9UHF7 1281 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 TMED5Q9Y3A6 229 aa9.52□□□□□ -0.89
LIG3-216ENST00000593099 SCN10AQ9Y5Y9 1956 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 A8MUA0 341 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 CD9P21926 228 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 NOS3P29474 1203 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 DCDC1P59894 354 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 DNAJB13P59910 316 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 SLC25A3Q00325 362 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 MEF2AQ02078 507 aaPredicted RBP9.51□□□□□ -0.89
LIG3-216ENST00000593099 DLX2Q07687 328 aaPredicted RBP9.51□□□□□ -0.89
LIG3-216ENST00000593099 BNIP2Q12982 314 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 BIKQ13323 160 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 GRM7Q14831 915 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 DUOXA1Q1HG43 343 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 TCTE1Q5JU00 501 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 ERICH5Q6P6B1 374 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 ADAMTSL4Q6UY14 1074 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 FAM92BQ6ZTR7 304 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 CEP97Q8IW35 865 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 EID3Q8N140 333 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 CSNK1A1LQ8N752 337 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 RNASE11Q8TAA1 199 aaKnown RBP9.51□□□□□ -0.89
LIG3-216ENST00000593099 ZNF382Q96SR6 550 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 C17orf62Q9BQA9 187 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 GAREM1Q9H706 876 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 ENOPH1Q9UHY7 261 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 ANAPC2Q9UJX6 822 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 STOML2Q9UJZ1 356 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 A0A1W2PRB8 838 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 ITGA2P17301 1181 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 PRLHRP49683 370 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 AGTR2P50052 363 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 NCBP2P52298 156 aaKnown RBP eCLIP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms