RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	SLC35E2B	P0CK96	405 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	CCDC166	P0CW27	439 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	NCF1	P14598	390 aa	Predicted RBP	9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	NPPB	P16860	134 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	STX2	P32856	288 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	FOLR3	P41439	243 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	ARSF	P54793	590 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	IRF9	Q00978	393 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	USP10	Q14694	798 aa	Known RBP	9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	OR4D1	Q15615	310 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	NKG7	Q16617	165 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	CATSPERE	Q5SY80	951 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	LCTL	Q6UWM7	567 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	CYS1	Q717R9	158 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	C17orf64	Q86WR6	236 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	PTRH1	Q86Y79	214 aa	Known RBP	9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	APLF	Q8IW19	511 aa	Predicted RBP	9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	PRSS58	Q8IYP2	241 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	NKAP	Q8N5F7	415 aa	Known RBP	9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	AMER3	Q8N944	861 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	ZNF740	Q8NDX6	193 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	OR2Y1	Q8NGV0	311 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	KIF18A	Q8NI77	898 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	NEIL2	Q969S2	332 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	MOCOS	Q96EN8	888 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	DHRS4	Q9BTZ2	278 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	DERL2	Q9GZP9	239 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	SLC25A18	Q9H1K4	315 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	SOX17	Q9H6I2	414 aa	Predicted RBP	9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	TXNDC16	Q9P2K2	825 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	CTNNAL1	Q9UBT7	734 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	TUBD1	Q9UJT1	453 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	TLK1	Q9UKI8	766 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	NOVA2	Q9UNW9	492 aa	Known RBP	9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	PADI2	Q9Y2J8	665 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	OARD1	Q9Y530	152 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216	ASB1	Q9Y576	335 aa		9.4	□□□□□ -0.9
PTPN2-208	ENST00000589216		A0A0A6YYC8	382 aa	Predicted RBP	9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216		I3L1I5	382 aa	Predicted RBP	9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	KIF2A	O00139	706 aa	Predicted RBP	9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	LCMT2	O60294	686 aa	Known RBP	9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	ACSL3	O95573	720 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	PLA2G2A	P14555	144 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	CD1D	P15813	335 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	STMN1	P16949	149 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	HIST1H2AD	P20671	130 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	GDF5	P43026	501 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	SLC6A12	P48065	614 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	CSRP3	P50461	194 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	SLC12A2	P55011	1212 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	RAB10	P61026	200 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	C19orf57	Q0VDD7	668 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	CSHL1	Q14406	222 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	SYT16	Q17RD7	645 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	MUM1	Q2TAK8	710 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	YOD1	Q5VVQ6	348 aa	Predicted RBP	9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	CAPN13	Q6MZZ7	669 aa	Predicted RBP	9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	OVCH1	Q7RTY7	1134 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	ADAMTSL2	Q86TH1	951 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	GSPT2	Q8IYD1	628 aa	Known RBP	9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	CENPL	Q8N0S6	344 aa	Predicted RBP	9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	AMER2	Q8N7J2	671 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	MNS1	Q8NEH6	495 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	ZCCHC10	Q8TBK6	192 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	THAP4	Q8WY91	577 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	IFT81	Q8WYA0	676 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	EXT2	Q93063	718 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	TRIM44	Q96DX7	344 aa	Predicted RBP	9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	HIST1H2AH	Q96KK5	128 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	UBXN10	Q96LJ8	280 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	FMO2	Q99518	471 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	HIST1H2AJ	Q99878	128 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	EGFL8	Q99944	293 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	H2AFJ	Q9BTM1	129 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	TRIM4	Q9C037	500 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	ING2	Q9H160	280 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	SLC26A1	Q9H2B4	701 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	ACSS3	Q9H6R3	686 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	TMEM184C	Q9NVA4	438 aa		9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	GPN3	Q9UHW5	284 aa	Predicted RBP	9.39	□□□□□ -0.91
PTPN2-208	ENST00000589216	SCN2A	Q99250	2005 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	VSTM2B	A6NLU5	285 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216		B8ZZF3	427 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	C4orf51	C9J302	202 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	SOCS6	O14544	535 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	TAPBP	O15533	448 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	PRAMEF4	O60810	478 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	B3GALT4	O96024	378 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	IL1RN	P18510	177 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	FBL	P22087	321 aa	Known RBP	9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	CCND1	P24385	295 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	VARS	P26640	1264 aa	Known RBP	9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	SPR	P35270	261 aa	Predicted RBP	9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	KCNC1	P48547	511 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	RPS15A	P62244	130 aa	Known RBP	9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	MAT1A	Q00266	395 aa	Known RBP	9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	CDKL1	Q00532	357 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	REEP5	Q00765	189 aa		9.38	□□□□□ -0.91
PTPN2-208	ENST00000589216	RELA	Q04206	551 aa		9.38	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms