RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 AVPR1BP47901 424 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 PMS2P54278 862 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 ATP6V0D1P61421 351 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 CUL3Q13618 768 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 GRB7Q14451 532 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 SSPNQ14714 243 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 NKAIN1Q4KMZ8 207 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 MSS51Q4VC12 460 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 LRRC23Q53EV4 343 aaPredicted RBP8.3□□□□□ -1.08
USP3-208ENST00000558285 HP1BP3Q5SSJ5 553 aaPredicted RBP8.3□□□□□ -1.08
USP3-208ENST00000558285 GRTP1Q5TC63 336 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 MLIPQ5VWP3 458 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 PAQR3Q6TCH7 311 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 ZNF517Q6ZMY9 492 aaPredicted RBP8.3□□□□□ -1.08
USP3-208ENST00000558285 C2orf73Q8N5S3 287 aaPredicted RBP8.3□□□□□ -1.08
USP3-208ENST00000558285 ENDOVQ8N8Q3 282 aaKnown RBP8.3□□□□□ -1.08
USP3-208ENST00000558285 CLEC1AQ8NC01 280 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 CAMKVQ8NCB2 501 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 OR2A1Q8NGT9 310 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 ZDHHC16Q969W1 377 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 TSNARE1Q96NA8 513 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 EGFL8Q99944 293 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 MENTQ9BUN1 341 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 ACAT2Q9BWD1 397 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 SLC25A18Q9H1K4 315 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 CUTCQ9NTM9 273 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 IL17BQ9UHF5 180 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 TLK1Q9UKI8 766 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 TCFL5Q9UL49 500 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 A0A0J9YVX5 310 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 OR2A25A4D2G3 310 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 E7ENX8 843 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 H2AFYO75367 372 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 WFS1O76024 890 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 TIAF1O95411 115 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 EIF2S1P05198 315 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 SLC35G6P0C7Q6 338 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 VAMP1P23763 118 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 CRABP2P29373 138 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 PEX19P40855 299 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 MAGEA4P43358 317 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 SERPINB4P48594 390 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 CCR8P51685 355 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 VSX2P58304 361 aaPredicted RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 TAP2Q03519 686 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 TMED1Q13445 227 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 USP10Q14694 798 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 DEFB110Q30KQ9 67 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ZNF789Q5FWF6 425 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 CDKL4Q5MAI5 379 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 WASHC2DQ5SRD0 308 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 LGSNQ5TDP6 509 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 GKAP1Q5VSY0 366 aaPredicted RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 KLC3Q6P597 504 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ZNF549Q6P9A3 640 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 AGTRAPQ6RW13 159 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 LCTLQ6UWM7 567 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 TTLL10Q6ZVT0 673 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 RAPH1Q70E73 1250 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 RNF44Q7L0R7 432 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 PIWIL4Q7Z3Z4 852 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 TBC1D1Q86TI0 1168 aaPredicted RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 ZC3HC1Q86WB0 502 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 IFT20Q8IY31 132 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 IQCKQ8N0W5 287 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 CSNK1A1LQ8N752 337 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ANKS4BQ8N8V4 417 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 B4GALNT2Q8NHY0 566 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 FLVCR1-AS1Q8TAF5 88 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ZNF480Q8WV37 535 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 EEF1AKMT1Q8WVE0 214 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 COL26A1Q96A83 441 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 KCTD12Q96CX2 325 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 PPM1MQ96MI6 270 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 CYTH2Q99418 400 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 TRIM56Q9BRZ2 755 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 FAM60AQ9NP50 221 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ENAMQ9NRM1 1142 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ABCF3Q9NUQ8 709 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 C14orf105Q9NVL8 296 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ANAPC2Q9UJX6 822 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 RUVBL2Q9Y230 463 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 PTRH2Q9Y3E5 179 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 KCNE2Q9Y6J6 123 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 A0A088AWK7 358 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 FITM1A5D6W6 292 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 B8ZZF3 427 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 BANF1O75531 89 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ANP32DO95626 131 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 CYC1P08574 325 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 TPBGLP0DKB5 382 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ZNF37AP17032 561 aaPredicted RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 ZNF10P21506 573 aaPredicted RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 FBLP22087 321 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 GSTM2P28161 218 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 PEBP1P30086 187 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 SLC26A3P40879 764 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 PGDP52209 483 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 TBPL1P62380 186 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms