RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CABS1Q96KC9 395 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 OR2A5Q96R48 311 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 TCF12Q99081 682 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 YIPF2Q9BWQ6 316 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 EPS8L2Q9H6S3 715 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 NEUROD4Q9HD90 331 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 MRPS30Q9NP92 439 aaKnown RBP8.05□□□□□ -1.12
USP28-215ENST00000545608 LZTFL1Q9NQ48 299 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 PLA2G3Q9NZ20 509 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 TAC3Q9UHF0 121 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 OSGIN2Q9Y236 505 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 RUVBL1Q9Y265 456 aaKnown RBP8.05□□□□□ -1.12
USP28-215ENST00000545608 ZKSCAN5Q9Y2L8 839 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 DOPEY1Q5JWR5 2465 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 CACNA1DQ01668 2161 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 DOCK10Q96BY6 2186 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 NSG1A0A0A6YYJ2 146 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 IDSB3KWA1 339 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 E5RI56 91 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 E7ENX8 843 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 TGFBR3LH3BV60 316 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 PFDN6O15212 129 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 LRRTM2O43300 516 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 FOXS1O43638 330 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 CATP04040 527 aaKnown RBP8.04□□□□□ -1.12
USP28-215ENST00000545608 CELA2AP08217 269 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 PRR35P0CG20 571 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 ERVK-10P10266 1014 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 EDN3P14138 238 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 CXCR5P32302 372 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 RPA3P35244 121 aaPredicted RBP8.04□□□□□ -1.12
USP28-215ENST00000545608 SLC26A3P40879 764 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 MAGEA6P43360 314 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 CLCN7P51798 805 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 EFNA3P52797 238 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 PNLIPRP1P54315 467 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 TAP2Q03519 686 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 EEF1A2Q05639 463 aaKnown RBP8.04□□□□□ -1.12
USP28-215ENST00000545608 GPS1Q13098 491 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 CTBP1Q13363 440 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 ARHGAP19Q14CB8 494 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 NAA25Q14CX7 972 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 SYT16Q17RD7 645 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 RNF187Q5TA31 235 aaPredicted RBP8.04□□□□□ -1.12
USP28-215ENST00000545608 ICE2Q659A1 982 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 B3GNTL1Q67FW5 361 aaPredicted RBP8.04□□□□□ -1.12
USP28-215ENST00000545608 FAAH2Q6GMR7 532 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 RPUSD3Q6P087 351 aaKnown RBP8.04□□□□□ -1.12
USP28-215ENST00000545608 ZNF549Q6P9A3 640 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 ZNF662Q6ZS27 426 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 NDUFAF7Q7L592 441 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 CILP2Q8IUL8 1156 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 PLD3Q8IV08 490 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 DENND6AQ8IWF6 608 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 KBTBD2Q8IY47 623 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 LRRC56Q8IYG6 542 aaPredicted RBP8.04□□□□□ -1.12
USP28-215ENST00000545608 SHISA5Q8N114 240 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 CSNK1A1LQ8N752 337 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 AMER3Q8N944 861 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 OR1N1Q8NGS0 311 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 GIMAP7Q8NHV1 300 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 BRIX1Q8TDN6 353 aaKnown RBP8.04□□□□□ -1.12
USP28-215ENST00000545608 COG1Q8WTW3 980 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 ZNF480Q8WV37 535 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 ABCF3Q9NUQ8 709 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 PTGFRNQ9P2B2 879 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 TRPC4Q9UBN4 977 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 CDC14AQ9UNH5 594 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 MED16Q9Y2X0 877 aa8.04□□□□□ -1.12
USP28-215ENST00000545608 UNC79Q9P2D8 2635 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 LOC102723996A0A087X1L8 192 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 IGHV1-45A0A0A0MS14 117 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 A0A0A6YYC8 382 aaPredicted RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 ZCWPW2A0A1B0GU75 182 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 FAM237BA0A1B0GVD1 139 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 A0A1W2PQ72 361 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 CTAGE9A4FU28 777 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 I3L1I5 382 aaPredicted RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 DYNC1I1O14576 645 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 P2RX6O15547 441 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 PHF2O75151 1096 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 VPS26AO75436 327 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 USP1O94782 785 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 SLC16A8O95907 504 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 SYF2O95926 243 aaKnown RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 F10P00742 488 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 KRT14P02533 472 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 STATHP02808 62 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 SERPINA7P05543 415 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 HEXBP07686 556 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 PAMP19021 973 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 CXCR2P25025 360 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 HSD17B2P37059 387 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 ARG2P78540 354 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 SARNPP82979 210 aaKnown RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 MAT1AQ00266 395 aaKnown RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 SRSF11Q05519 484 aaKnown RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 CUL1Q13616 776 aa8.03□□□□□ -1.12
USP28-215ENST00000545608 DHX34Q14147 1143 aaKnown RBP8.03□□□□□ -1.12
USP28-215ENST00000545608 GARNL3Q5VVW2 1013 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms