RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 DOC2AQ14183 400 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 ABRAXAS2Q15018 415 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 TSNAXIP1Q2TAA8 658 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 MUM1Q2TAK8 710 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 TMEM52BQ4KMG9 183 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 KYAT3Q6YP21 454 aaKnown RBP6.96□□□□□ -1.29
MSH6-209ENST00000538136 RBM44Q6ZP01 1051 aaKnown RBP6.96□□□□□ -1.29
MSH6-209ENST00000538136 CUZD1Q86UP6 607 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 CCDC116Q8IYX3 515 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 LRRC34Q8IZ02 419 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 C2CD4AQ8NCU7 369 aaPredicted RBP6.96□□□□□ -1.29
MSH6-209ENST00000538136 CADM4Q8NFZ8 388 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 OR4F6Q8NGB9 312 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 OR2L2Q8NH16 312 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 NUDT8Q8WV74 236 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 CLDN23Q96B33 292 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 CENPTQ96BT3 561 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 SH3YL1Q96HL8 342 aaPredicted RBP6.96□□□□□ -1.29
MSH6-209ENST00000538136 TRIB3Q96RU7 358 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 SMAD5Q99717 465 aaKnown RBP6.96□□□□□ -1.29
MSH6-209ENST00000538136 MRPL57Q9BQC6 102 aaKnown RBP6.96□□□□□ -1.29
MSH6-209ENST00000538136 NRSN2Q9GZP1 204 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 IRF2BPLQ9H1B7 796 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 LRRN3Q9H3W5 708 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 C11orf16Q9NQ32 467 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 EIF2B3Q9NR50 452 aaKnown RBP6.96□□□□□ -1.29
MSH6-209ENST00000538136 ANKMY1Q9P2S6 941 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 TNFRSF10DQ9UBN6 386 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 B3GALT1Q9Y5Z6 326 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 HS3ST3A1Q9Y663 406 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 USP34Q70CQ2 3546 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 LOC105369274A0A096LPK9 316 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 IGHV5-51A0A0C4DH38 117 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 LOC102723532A0A0G2JNH3 316 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 TTLL8A6PVC2 850 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 DLX3O60479 287 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 KLHL2O95198 593 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 FKBP9O95302 570 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 CDH2P19022 906 aaPredicted RBP6.96□□□□□ -1.29
MSH6-209ENST00000538136 MANFP55145 182 aaKnown RBP6.96□□□□□ -1.29
MSH6-209ENST00000538136 TIGD2Q4W5G0 525 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 DCAF12Q5T6F0 453 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 FKBP9P1Q75LS8 142 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 OR4N4Q8N0Y3 316 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 PHTF2Q8N3S3 785 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 SLC5A11Q8WWX8 675 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 ANKRD7Q92527 254 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 KAT2AQ92830 837 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 SLC22A18Q96BI1 424 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 N6AMT1Q9Y5N5 214 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 HEBP2Q9Y5Z4 205 aa6.96□□□□□ -1.29
MSH6-209ENST00000538136 COL4A3Q01955 1670 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 ZNF839A8K0R7 811 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 MAGEB17A8MXT2 336 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 C5orf58C9J3I9 102 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 H3BQF6 201 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 K7EPI3 171 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 ANGPT2O15123 496 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 REM1O75628 298 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 PDE9AO76083 593 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 BAG2O95816 211 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 SLC35E2BP0CK96 405 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 CNR2P34972 360 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 XCR1P46094 333 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 CXADRP78310 365 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 MANEAQ5SRI9 462 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 KCTD11Q693B1 232 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 KIAA0408Q6ZU52 694 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 AMER2Q8N7J2 671 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 APOPT1Q96IL0 206 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 CCDC138Q96M89 665 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 AHSPQ9NZD4 102 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 PTGFRNQ9P2B2 879 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 PADI1Q9ULC6 663 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 RBBP6Q7Z6E9 1792 aaKnown RBP6.96□□□□□ -1.3
MSH6-209ENST00000538136 MAP1AP78559 2803 aaPredicted RBP6.96□□□□□ -1.3
MSH6-209ENST00000538136 A0A1B0GTQ1 180 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 TMEM247A6NEH6 219 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 A8MT66 165 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 HMGB1P1B2RPK0 211 aaPredicted RBP6.96□□□□□ -1.3
MSH6-209ENST00000538136 H0YGG7 62 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 CLDN4O14493 209 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 FZD6O60353 706 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 OTCP00480 354 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 CHRM5P08912 532 aaPredicted RBP6.96□□□□□ -1.3
MSH6-209ENST00000538136 UGT2B7P16662 529 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 HTR6P50406 440 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 CCR5P51681 352 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 ARF3P61204 181 aaPredicted RBP6.96□□□□□ -1.3
MSH6-209ENST00000538136 HPCAP84074 193 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 TMEM259Q4ZIN3 620 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 CCDC121Q6ZUS5 278 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 FAM217AQ8IXS0 508 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 UBQLNLQ8IYU4 475 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 ZNF781Q8N8C0 355 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 MTBPQ96DY7 904 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 MCCC1Q96RQ3 725 aaPredicted RBP6.96□□□□□ -1.3
MSH6-209ENST00000538136 FUT8Q9BYC5 575 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 CHST8Q9H2A9 424 aa6.96□□□□□ -1.3
MSH6-209ENST00000538136 SLAMF7Q9NQ25 335 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms