RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 UBFD1O14562 309 aaKnown RBP13.14□□□□□ -0.31
CD44-224ENST00000526669 FFAR3O14843 346 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 TOX3O15405 576 aaPredicted RBP13.14□□□□□ -0.31
CD44-224ENST00000526669 GPR42O15529 346 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 OR1F1O43749 312 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 NPHS1O60500 1241 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 H2AFYO75367 372 aaKnown RBP13.14□□□□□ -0.31
CD44-224ENST00000526669 SERPINE1P05121 402 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 PCNAP12004 261 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 CCL4P13236 92 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 ITIH1P19827 911 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 GRK3P35626 688 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 ETV5P41161 510 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 BCL6P41182 706 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 ID4P47928 161 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 MAPK10P53779 464 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 ERVPABLB-1P60509 514 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 CYP4F2P78329 520 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 FOXM1Q08050 763 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 BST1Q10588 318 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 LCP2Q13094 533 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 NAA25Q14CX7 972 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 CPSF6Q16630 551 aaKnown RBP eCLIP13.14□□□□□ -0.31
CD44-224ENST00000526669 C3orf38Q5JPI3 329 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 TCHHL1Q5QJ38 904 aaPredicted RBP13.14□□□□□ -0.31
CD44-224ENST00000526669 TMTC4Q5T4D3 741 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 ADNP2Q6IQ32 1131 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 GRHL2Q6ISB3 625 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 FBXO42Q6P3S6 717 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 GPRIN3Q6ZVF9 776 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 RNF44Q7L0R7 432 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 KMT5CQ86Y97 462 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 LSMEM2Q8N112 164 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 CARFQ8N187 725 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 RNF175Q8N4F7 328 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 DNAJC22Q8N4W6 341 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 AGR3Q8TD06 166 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 AGAP11Q8TF27 550 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 N4BP2L2Q92802 583 aaPredicted RBP13.14□□□□□ -0.31
CD44-224ENST00000526669 PTCD3Q96EY7 689 aaKnown RBP13.14□□□□□ -0.31
CD44-224ENST00000526669 TCTN2Q96GX1 697 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 KCNA7Q96RP8 456 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 ZNF382Q96SR6 550 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 DRC3Q9H069 523 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 APMAPQ9HDC9 416 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 STARD5Q9NSY2 213 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 IRAK4Q9NWZ3 460 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 LOXL2Q9Y4K0 774 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 AHCTF1Q8WYP5 2266 aa13.14□□□□□ -0.31
CD44-224ENST00000526669 CCDC187A0A096LP49 1063 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 LOC105369274A0A096LPK9 316 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 LOC102723532A0A0G2JNH3 316 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 A0A1W2PNU3 283 aaPredicted RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 TRBC2A0A5B9 178 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 HGSO14964 777 aaPredicted RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 P2RX6O15547 441 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 MAP3K7O43318 606 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 SH3BGRLO75368 114 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 WFS1O76024 890 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 CLDN9O95484 217 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 HSPA4LO95757 839 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 MLYCDO95822 493 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 OTCP00480 354 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 EIF2S1P05198 315 aaKnown RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 SERPIND1P05546 499 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 HRH2P25021 359 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 HOXD11P31277 338 aaPredicted RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 GABRA4P48169 554 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 SLC1A6P48664 564 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 VSX2P58304 361 aaPredicted RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 ABCE1P61221 599 aaKnown RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 STX3Q13277 289 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 TUBB3Q13509 450 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 DDX39BQ13838 428 aaKnown RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 ARL13AQ5H913 290 aaPredicted RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 RAB11FIP2Q7L804 512 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 DGLUCYQ7Z3D6 616 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 CUZD1Q86UP6 607 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 TMPRSS12Q86WS5 348 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 MCATQ8IVS2 390 aaKnown RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.13□□□□□ -0.31
CD44-224ENST00000526669 OR4N4Q8N0Y3 316 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 KRT78Q8N1N4 520 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 ARFGAP2Q8N6H7 521 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 CDYL2Q8N8U2 506 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 ANKRD53Q8N9V6 530 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 AGBL5Q8NDL9 886 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 OR4K1Q8NGD4 311 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 OR6Y1Q8NGX8 325 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 FAM76AQ8TAV0 307 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 CCT6BQ92526 530 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 PMEPA1Q969W9 287 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 MTFMTQ96DP5 389 aaKnown RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 LIN37Q96GY3 246 aaPredicted RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 CNDP1Q96KN2 507 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 OR6C1Q96RD1 312 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 CTRCQ99895 268 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 ZFYVE21Q9BQ24 234 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 MACROD1Q9BQ69 325 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 EFCAB11Q9BUY7 163 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms