RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 SYNPO2LQ9H987 977 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 ACTR5Q9H9F9 607 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 PELI2Q9HAT8 420 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 OPTCQ9UBM4 332 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 TNPO3Q9Y5L0 923 aaKnown RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 ASPMQ8IZT6 3477 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 KCNE1BA0A087WTH5 132 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 TEX51A0A1B0GUA7 166 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 FITM1A5D6W6 292 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 COPEO14579 308 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 CLGNO14967 610 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 RGS16O15492 202 aaPredicted RBP11.42□□□□□ -0.58
VPS13D-204ENST00000469054 LCMT2O60294 686 aaKnown RBP11.42□□□□□ -0.58
VPS13D-204ENST00000469054 H2AFYO75367 372 aaKnown RBP11.42□□□□□ -0.58
VPS13D-204ENST00000469054 SIX3O95343 332 aaPredicted RBP11.42□□□□□ -0.58
VPS13D-204ENST00000469054 EIF2S1P05198 315 aaKnown RBP11.42□□□□□ -0.58
VPS13D-204ENST00000469054 C1GALT1C1LP0DN25 315 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 EPB42P16452 691 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 EPORP19235 508 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 TAC1P20366 129 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 CXCR2P25025 360 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 VARSP26640 1264 aaKnown RBP11.42□□□□□ -0.58
VPS13D-204ENST00000469054 BCL6P41182 706 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 ATP1A2P50993 1020 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 ARSFP54793 590 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 CLN3Q13286 438 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 TGIF1Q15583 401 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 CCDC153Q494R4 210 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 YOD1Q5VVQ6 348 aaPredicted RBP11.42□□□□□ -0.58
VPS13D-204ENST00000469054 ATG9BQ674R7 924 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 RHBDD2Q6NTF9 364 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 METTL2BQ6P1Q9 378 aaKnown RBP11.42□□□□□ -0.58
VPS13D-204ENST00000469054 SRRM1Q8IYB3 904 aaKnown RBP11.42□□□□□ -0.58
VPS13D-204ENST00000469054 CACNA2D3Q8IZS8 1091 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 TBC1D19Q8N5T2 526 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 IL22RA1Q8N6P7 574 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 CSNK1A1LQ8N752 337 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 TTC29Q8NA56 475 aaPredicted RBP11.42□□□□□ -0.58
VPS13D-204ENST00000469054 MFSD9Q8NBP5 474 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 NKD1Q969G9 470 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 RERGQ96A58 199 aaPredicted RBP11.42□□□□□ -0.58
VPS13D-204ENST00000469054 CLIP3Q96DZ5 547 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 EHD1Q9H4M9 534 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 LHX9Q9NQ69 397 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 STARD5Q9NSY2 213 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 PADI1Q9ULC6 663 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 ZMIZ1Q9ULJ6 1067 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 GRID1Q9ULK0 1009 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 SRPK3Q9UPE1 567 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 PCDHGA4Q9Y5G9 962 aa11.42□□□□□ -0.58
VPS13D-204ENST00000469054 TRBC2A0A5B9 178 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 HYKKA2RU49 373 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 LRRC14BA6NHZ5 514 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 A8MT66 165 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 MEN1O00255 615 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 E2F3O00716 465 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 TXNDC9O14530 226 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 KLK10O43240 276 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 OR1F1O43749 312 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 PRAMEF4O60810 478 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 KLK3P07288 261 aaPredicted RBP11.41□□□□□ -0.58
VPS13D-204ENST00000469054 CCNYL3P0C7X3 344 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 ATP5F1P24539 256 aaPredicted RBP11.41□□□□□ -0.58
VPS13D-204ENST00000469054 EEF1DP29692 281 aaKnown RBP11.41□□□□□ -0.58
VPS13D-204ENST00000469054 RORAP35398 523 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 GCGRP47871 477 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 SCTRP47872 440 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 EMP3P54852 163 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 REEP5Q00765 189 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 MEF2AQ02078 507 aaPredicted RBP11.41□□□□□ -0.58
VPS13D-204ENST00000469054 IRF8Q02556 426 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 PCDH1Q08174 1060 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 ABHD18Q0P651 414 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 GPS2Q13227 327 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 CHIT1Q13231 466 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 CASP8Q14790 479 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 TBCCQ15814 346 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 PRTGQ2VWP7 1150 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 FAM214AQ32MH5 1076 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 XKR6Q5GH73 641 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 PRAMEF9Q5VWM5 478 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 ZNF517Q6ZMY9 492 aaPredicted RBP11.41□□□□□ -0.58
VPS13D-204ENST00000469054 LRRC69Q6ZNQ3 347 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 VN1R4Q7Z5H5 301 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 SPACA3Q8IXA5 215 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 DSELQ8IZU8 1212 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 KRT78Q8N1N4 520 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 TEX9Q8N6V9 391 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 BANPQ8N9N5 519 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 ZNF740Q8NDX6 193 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 PROKR1Q8TCW9 393 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 WDR34Q96EX3 536 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 PTCD3Q96EY7 689 aaKnown RBP11.41□□□□□ -0.58
VPS13D-204ENST00000469054 SMC6Q96SB8 1091 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 NDC1Q9BTX1 674 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 SPNS1Q9H2V7 528 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 AKIRIN1Q9H9L7 192 aaPredicted RBP11.41□□□□□ -0.58
VPS13D-204ENST00000469054 CUTCQ9NTM9 273 aa11.41□□□□□ -0.58
VPS13D-204ENST00000469054 ARGLU1Q9NWB6 273 aaPredicted RBP11.41□□□□□ -0.58
VPS13D-204ENST00000469054 GEMIN8Q9NWZ8 242 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms