RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ANXA4P09525 319 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 CYP4B1P13584 511 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 EPCAMP16422 314 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 HNF4AP41235 474 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 HTRA4P83105 476 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 GRSF1Q12849 480 aaKnown RBP eCLIP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 TSTA3Q13630 321 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 RAPSNQ13702 412 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 DHCR24Q15392 516 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 TCEAL5Q5H9L2 206 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF691Q5VV52 312 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 OR2T5Q6IEZ7 315 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 GPR155Q7Z3F1 870 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 ZBTB46Q86UZ6 589 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 C12orf40Q86WS4 652 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF557Q8N988 423 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 DRAXINQ8NBI3 349 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 VN1R2Q8NFZ6 395 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 OR2T29Q8NH02 315 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 OR56A3Q8NH54 315 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 CNIH3Q8TBE1 160 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 ATL1Q8WXF7 558 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 EZH1Q92800 747 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 GLMNQ92990 594 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 ITFG2Q969R8 447 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 THAP11Q96EK4 314 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 VPS35Q96QK1 796 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 TPT1P8Q9HAU6 139 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 PAK1IP1Q9NWT1 392 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 FAM120CQ9NX05 1096 aaKnown RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 CXXC1Q9P0U4 656 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 NFKBIL1Q9UBC1 381 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 VPS4AQ9UN37 437 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 K7ESM1 405 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 QSOX1O00391 747 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 PLK4O00444 970 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 SCAMP2O15127 329 aaKnown RBP8.63□□□□□ -1.03
SYNE1-217ENST00000466159 SLC16A6O15403 523 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 MYO1DO94832 1006 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 FKBP9O95302 570 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF182P17025 639 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-217ENST00000466159 IGFBP5P24593 272 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 GSTM2P28161 218 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 DAPP51397 102 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 HNRNPFP52597 415 aaKnown RBP8.63□□□□□ -1.03
SYNE1-217ENST00000466159 RAD23AP54725 363 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 RPS13P62277 151 aaKnown RBP8.63□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF33BQ06732 778 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 SIM2Q14190 667 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-217ENST00000466159 CATSPEREQ5SY80 951 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 CPTPQ5TA50 214 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 SPRED2Q7Z698 418 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 TMPRSS11BQ86T26 416 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 CFAP206Q8IYR0 622 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 POF1BQ8WVV4 589 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 MAL2Q969L2 176 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 MYOCQ99972 504 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 PREBQ9HCU5 417 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 RAD18Q9NS91 495 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 MARK1Q9P0L2 795 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 DKK3Q9UBP4 350 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 SH2B3Q9UQQ2 575 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 PCDHB11Q9Y5F2 797 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 ORC6Q9Y5N6 252 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 A0A0J9YVX5 310 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 GNG14A0A1W2PPG7 69 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 TRIM64BA6NI03 449 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 H3BM21 787 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 SLC1A7O00341 560 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 BCKDKO14874 412 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 SPINT1O43278 529 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 XPNPEP2O43895 674 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 GBAP04062 536 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 NTRK1P04629 796 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 FABP3P05413 133 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 CISD3P0C7P0 127 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 PCSK2P16519 638 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 CEBPBP17676 345 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 IRS1P35568 1242 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 DGKGP49619 791 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 PLA2G16P53816 162 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 CASP9P55211 416 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 IL5RAQ01344 420 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 BNIP3Q12983 259 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 CDK5R2Q13319 367 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 PRSS36Q5K4E3 855 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 GTF2IRD2BQ6EKJ0 949 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 PDE12Q6L8Q7 609 aaKnown RBP8.63□□□□□ -1.03
SYNE1-217ENST00000466159 ERAP2Q6P179 960 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 XKR5Q6UX68 686 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 SLCO4C1Q6ZQN7 724 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 GTF2IRD2Q86UP8 949 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 ZC3H7AQ8IWR0 971 aaKnown RBP8.63□□□□□ -1.03
SYNE1-217ENST00000466159 SYTL1Q8IYJ3 562 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 PIK3C3Q8NEB9 887 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 ST13P5Q8NFI4 369 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF480Q8WV37 535 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 CHTF18Q8WVB6 975 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 TANKQ92844 425 aa8.63□□□□□ -1.03
SYNE1-217ENST00000466159 TPD52L3Q96J77 140 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms