RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 CCDC138Q96M89 665 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 OR2A5Q96R48 311 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 PKP4Q99569 1192 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 FAM167BQ9BTA0 163 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 TUBB6Q9BUF5 446 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 TRIM54Q9BYV2 358 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 RNF32Q9H0A6 362 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 ZNF160Q9HCG1 818 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 TAS2R13Q9NYV9 303 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 CIDEBQ9UHD4 219 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 TAC3Q9UHF0 121 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 MAD1L1Q9Y6D9 718 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 CENPEQ02224 2701 aa6.73□□□□□ -1.33
VPS41-208ENST00000448833 DIDO1Q9BTC0 2240 aaKnown RBP6.73□□□□□ -1.33
VPS41-208ENST00000448833 LOC102723996A0A087X1L8 192 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 IGHV1-45A0A0A0MS14 117 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 ENO4A6NNW6 628 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 GOLGA8KD6RF30 607 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 E7ENX8 843 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 GOLGA8TH3BQL2 631 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 PGRMC1O00264 195 aaKnown RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 CES2O00748 559 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 SLC16A5O15375 505 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 AVILO75366 819 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 PRR35P0CG20 571 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 C8orf89P0DMQ9 161 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 COILP38432 576 aaPredicted RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 FNTAP49354 379 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 VPS41P49754 854 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 AGTR2P50052 363 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 TNFSF10P50591 281 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 MEF2AQ02078 507 aaPredicted RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 TAP2Q03519 686 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 RBPJQ06330 500 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 SP140Q13342 867 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 FASTKQ14296 549 aaKnown RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 CYP1B1Q16678 543 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 VWA2Q5GFL6 755 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 ABHD17BQ5VST6 288 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 LINC00696Q6ZRV3 163 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 KIAA0408Q6ZU52 694 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 MICALCLQ6ZW33 695 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 UBE2R2Q712K3 238 aaPredicted RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 CAND1Q86VP6 1230 aaKnown RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 PPIL6Q8IXY8 311 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 RASGEF1CQ8N431 466 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 METTL27Q8N6F8 245 aaPredicted RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 HORMAD2Q8N7B1 307 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS41-208ENST00000448833 OR1N1Q8NGS0 311 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 GRHL3Q8TE85 626 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 ZNF480Q8WV37 535 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 ATL1Q8WXF7 558 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 C10orf90Q96M02 699 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 SERPINB12Q96P63 405 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 TRIM56Q9BRZ2 755 aaKnown RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 HAUS8Q9BT25 410 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 ZNF700Q9H0M5 742 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 PARVBQ9HBI1 364 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 ZBTB20Q9HC78 741 aaPredicted RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 ANKHQ9HCJ1 492 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 CCDC177Q9NQR7 707 aaPredicted RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 C20orf96Q9NUD7 363 aaPredicted RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 OLAHQ9NV23 265 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 STMN3Q9NZ72 180 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 ABI3Q9P2A4 366 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 PCYOX1Q9UHG3 505 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 TRMT6Q9UJA5 497 aaKnown RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 ERRFI1Q9UJM3 462 aaPredicted RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 FBXO5Q9UKT4 447 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 MKL2Q9ULH7 1088 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 CORO1CQ9ULV4 474 aaPredicted RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 RUVBL2Q9Y230 463 aaKnown RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 RUVBL1Q9Y265 456 aaKnown RBP6.72□□□□□ -1.33
VPS41-208ENST00000448833 PPP2R2CQ9Y2T4 447 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 PCDHGB6Q9Y5F9 930 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 POLEQ07864 2286 aa6.72□□□□□ -1.33
VPS41-208ENST00000448833 A0A0A6YYC8 382 aaPredicted RBP6.71□□□□□ -1.34
VPS41-208ENST00000448833 ZCWPW2A0A1B0GU75 182 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 TCRBV7S3A2A0A539 114 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 URADA6NGE7 173 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 H7BY64 318 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 I3L1I5 382 aaPredicted RBP6.71□□□□□ -1.34
VPS41-208ENST00000448833 NDC80O14777 642 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 LRRTM2O43300 516 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 ZSCAN12O43309 604 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 ALOX12BO75342 701 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 JRKO75564 520 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 KLHL18O94889 574 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 NSA2O95478 260 aaKnown RBP6.71□□□□□ -1.34
VPS41-208ENST00000448833 SLC35G6P0C7Q6 338 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 COX6A1P12074 109 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 PGAM1P18669 254 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 CASP6P55212 293 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 AP1S2P56377 157 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 IL2P60568 153 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 LSM11P83369 360 aaKnown RBP eCLIP6.71□□□□□ -1.34
VPS41-208ENST00000448833 CTBP1Q13363 440 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 HERC3Q15034 1050 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms