RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 A0A1B0GUH1 482 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 H7BY64 318 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 TXNDC9O14530 226 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 FOXS1O43638 330 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 KIF5CO60282 957 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 SEC24DO94855 1032 aaPredicted RBP13.76□□□□□ -0.21
SDC1-204ENST00000429035 WDPCPO95876 746 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 C8orf89P0DMQ9 161 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 IL1RNP18510 177 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 SLC26A3P40879 764 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 SLC1A2P43004 574 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 TNFSF10P50591 281 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 EMP3P54852 163 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 TBPL1P62380 186 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 MPP1Q00013 466 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 ZNF33BQ06732 778 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 PCOLCEQ15113 449 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 INAQ16352 499 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 ABHD17BQ5VST6 288 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 RPUSD3Q6P087 351 aaKnown RBP13.76□□□□□ -0.21
SDC1-204ENST00000429035 UBE2R2Q712K3 238 aaPredicted RBP13.76□□□□□ -0.21
SDC1-204ENST00000429035 PIWIL4Q7Z3Z4 852 aaKnown RBP13.76□□□□□ -0.21
SDC1-204ENST00000429035 PRELID2Q8N945 189 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 OR9A4Q8NGU2 314 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 METTL21AQ8WXB1 218 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 PSMF1Q92530 271 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 NR4A3Q92570 626 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 MARVELD3Q96A59 401 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 PRAP1Q96NZ9 151 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 GPR21Q99679 349 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 RBCK1Q9BYM8 510 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 CCDC177Q9NQR7 707 aaPredicted RBP13.76□□□□□ -0.21
SDC1-204ENST00000429035 HOMER3Q9NSC5 361 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 C20orf96Q9NUD7 363 aaPredicted RBP13.76□□□□□ -0.21
SDC1-204ENST00000429035 HCN3Q9P1Z3 774 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 E7ENX8 843 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 ZBTB14O43829 449 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 RASAL1O95294 804 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 MPC1LP0DKB6 136 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 ENO3P13929 434 aaPredicted RBP13.75□□□□□ -0.21
SDC1-204ENST00000429035 IMPA1P29218 277 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 AP2B1P63010 937 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 ABATP80404 500 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 TAP2Q03519 686 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 BTBD16Q32M84 506 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 RIPOR1Q6ZS17 1223 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 LANCL3Q6ZV70 420 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 PRSS41Q7RTY9 318 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 CAND1Q86VP6 1230 aaKnown RBP13.75□□□□□ -0.21
SDC1-204ENST00000429035 TRIM58Q8NG06 486 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 MAGOHBQ96A72 148 aaKnown RBP13.75□□□□□ -0.21
SDC1-204ENST00000429035 TAAR6Q96RI8 345 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 EBNA1BP2Q99848 306 aaKnown RBP13.75□□□□□ -0.21
SDC1-204ENST00000429035 MACROD1Q9BQ69 325 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 ZNF700Q9H0M5 742 aa13.75□□□□□ -0.21
SDC1-204ENST00000429035 SUCOQ9UBS9 1254 aaKnown RBP13.75□□□□□ -0.21
SDC1-204ENST00000429035 TRMT6Q9UJA5 497 aaKnown RBP13.75□□□□□ -0.21
SDC1-204ENST00000429035 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.74□□□□□ -0.21
SDC1-204ENST00000429035 FAM237BA0A1B0GVD1 139 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 A8MUI8 341 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 UNC5CO95185 931 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 STSP08842 583 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 TNFRSF8P28908 595 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 ST13P50502 369 aaKnown RBP13.74□□□□□ -0.21
SDC1-204ENST00000429035 TDGF1P3P51864 188 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 EFNA3P52797 238 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 SNRPNP63162 240 aaKnown RBP13.74□□□□□ -0.21
SDC1-204ENST00000429035 PMP22Q01453 160 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 LONRF1Q17RB8 773 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 FCRLBQ6BAA4 426 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 TTC27Q6P3X3 843 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 ZNF549Q6P9A3 640 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 MBOAT1Q6ZNC8 495 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 CD200R1Q8TD46 325 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 MCOLN3Q8TDD5 553 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 KCNJ9Q92806 393 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 SERPINB12Q96P63 405 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 NDNQ99608 321 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 TUBB6Q9BUF5 446 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 TGIF2Q9GZN2 237 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 VN1R1Q9GZP7 353 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 XAB2Q9HCS7 855 aaKnown RBP13.74□□□□□ -0.21
SDC1-204ENST00000429035 IARS2Q9NSE4 1012 aaKnown RBP13.74□□□□□ -0.21
SDC1-204ENST00000429035 COPG2Q9UBF2 871 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 C19orf25Q9UFG5 118 aaPredicted RBP13.74□□□□□ -0.21
SDC1-204ENST00000429035 TEKT2Q9UIF3 430 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 ITPR2Q14571 2701 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 CRYBG3Q68DQ2 2970 aa13.74□□□□□ -0.21
SDC1-204ENST00000429035 LOC102723996A0A087X1L8 192 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 FEZF1A0PJY2 475 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 OR5H15A6NDH6 313 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 SDR42E2A6NKP2 422 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 SGK494L7N484 410 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 PCDH17O14917 1159 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 HNRNPRO43390 633 aaKnown RBP13.73□□□□□ -0.21
SDC1-204ENST00000429035 XCR1P46094 333 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 RPS15AP62244 130 aaKnown RBP13.73□□□□□ -0.21
SDC1-204ENST00000429035 FAM53BQ14153 422 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 TMEM205Q6UW68 189 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 FBXO15Q8NCQ5 510 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms