RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 C2orf83Q53S99 150 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 C9orf66Q5T8R8 295 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 OR10Q1Q8NGQ4 319 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 PTPMT1Q8WUK0 201 aaPredicted RBP3.31□□□□□ -1.88
LINC01040-201ENST00000425048 FAM71F1Q96KD3 344 aaPredicted RBP3.31□□□□□ -1.88
LINC01040-201ENST00000425048 HNRNPABQ99729 332 aaKnown RBP3.31□□□□□ -1.88
LINC01040-201ENST00000425048 APOL2Q9BQE5 337 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 TMX4Q9H1E5 349 aaPredicted RBP3.31□□□□□ -1.88
LINC01040-201ENST00000425048 SUCLA2Q9P2R7 463 aaPredicted RBP3.31□□□□□ -1.88
LINC01040-201ENST00000425048 WDR83OSQ9Y284 106 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 RALGAPA1Q6GYQ0 2036 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 EEA1Q15075 1411 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 GON4LQ3T8J9 2241 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 ARID4BQ4LE39 1312 aaPredicted RBP3.3□□□□□ -1.88
LINC01040-201ENST00000425048 PI4KAP2A4QPH2 592 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 K7ENM7 598 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 CTDSP2O14595 271 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 IPO8O15397 1037 aaKnown RBP3.3□□□□□ -1.88
LINC01040-201ENST00000425048 TOMM70O94826 608 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 TRIM21P19474 475 aaKnown RBP3.3□□□□□ -1.88
LINC01040-201ENST00000425048 EDNRAP25101 427 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 MATR3P43243 847 aaKnown RBP eCLIP3.3□□□□□ -1.88
LINC01040-201ENST00000425048 MAPK12P53778 367 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 IGLV3-21P80748 117 aaPredicted RBP3.3□□□□□ -1.88
LINC01040-201ENST00000425048 VEZF1Q14119 521 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 ALDH1L2Q3SY69 923 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 UTF1Q5T230 341 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 MMS22LQ6ZRQ5 1243 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 SPACA9Q96E40 222 aaPredicted RBP3.3□□□□□ -1.88
LINC01040-201ENST00000425048 SEPHS2Q99611 448 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 CDCA3Q99618 268 aaPredicted RBP3.3□□□□□ -1.88
LINC01040-201ENST00000425048 LRRCC1Q9C099 1032 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 EGLN3Q9H6Z9 239 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 ASB8Q9H765 288 aa3.3□□□□□ -1.88
LINC01040-201ENST00000425048 TDRD6O60522 2096 aaKnown RBP3.3□□□□□ -1.88
LINC01040-201ENST00000425048 MYH14Q7Z406 1995 aaKnown RBP3.29□□□□□ -1.88
LINC01040-201ENST00000425048 VIRMAQ69YN4 1812 aaKnown RBP3.29□□□□□ -1.88
LINC01040-201ENST00000425048 USO1O60763 962 aaKnown RBP3.29□□□□□ -1.88
LINC01040-201ENST00000425048 TPM2P07951 284 aa3.29□□□□□ -1.88
LINC01040-201ENST00000425048 MPZP25189 248 aa3.29□□□□□ -1.88
LINC01040-201ENST00000425048 ANP32AP39687 249 aaKnown RBP3.29□□□□□ -1.88
LINC01040-201ENST00000425048 PSMB10P40306 273 aa3.29□□□□□ -1.88
LINC01040-201ENST00000425048 SRPXP78539 464 aa3.29□□□□□ -1.88
LINC01040-201ENST00000425048 MPP1Q00013 466 aa3.29□□□□□ -1.88
LINC01040-201ENST00000425048 ACY1Q03154 408 aa3.29□□□□□ -1.88
LINC01040-201ENST00000425048 UPP1Q16831 310 aa3.29□□□□□ -1.88
LINC01040-201ENST00000425048 TMEM211Q6ICI0 200 aa3.29□□□□□ -1.88
LINC01040-201ENST00000425048 SLC24A5Q71RS6 500 aa3.29□□□□□ -1.88
LINC01040-201ENST00000425048 HSCBQ8IWL3 235 aa3.29□□□□□ -1.88
LINC01040-201ENST00000425048 GUF1Q8N442 669 aaKnown RBP3.29□□□□□ -1.88
LINC01040-201ENST00000425048 AVL9Q8NBF6 648 aa3.29□□□□□ -1.88
LINC01040-201ENST00000425048 NOA1Q8NC60 698 aaKnown RBP3.29□□□□□ -1.88
LINC01040-201ENST00000425048 LOC100509620A0A075B734 347 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 GPR75-ASB3A0A0A6YYF3 556 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 C2CD4DB7Z1M9 353 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 MTRF1O75570 445 aaKnown RBP3.28□□□□□ -1.88
LINC01040-201ENST00000425048 C9P02748 559 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 MT-ND1P03886 318 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 RPL34P49207 117 aaKnown RBP3.28□□□□□ -1.88
LINC01040-201ENST00000425048 CCR3P51677 355 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 RIDAP52758 137 aaKnown RBP3.28□□□□□ -1.88
LINC01040-201ENST00000425048 CDH13P55290 713 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 OPCMLQ14982 345 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 HERC4Q5GLZ8 1057 aaPredicted RBP3.28□□□□□ -1.88
LINC01040-201ENST00000425048 LEMD1Q68G75 181 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 VASH2Q86V25 355 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 SERINC5Q86VE9 423 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 HIPK1Q86Z02 1210 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 CNPY4Q8N129 248 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 SDHCQ99643 169 aaPredicted RBP3.28□□□□□ -1.88
LINC01040-201ENST00000425048 DNAI2Q9GZS0 605 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 PNNQ9H307 717 aaKnown RBP3.28□□□□□ -1.88
LINC01040-201ENST00000425048 Q9H8V8 135 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 HACD3Q9P035 362 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 ADAM22Q9P0K1 906 aa3.28□□□□□ -1.88
LINC01040-201ENST00000425048 RPL37AP8A6NKH3 93 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 F8VVB4 439 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 F8VWA3 439 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 CCER2I3L3R5 266 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 ADAMDEC1O15204 470 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 HDAC3O15379 428 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 TXNL1O43396 289 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 ECE2O60344 883 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 DNASE1P24855 282 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 ZNF75DP51815 510 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 DMTNQ08495 405 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 HSPB3Q12988 150 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 SIX1Q15475 284 aaPredicted RBP3.27□□□□□ -1.89
LINC01040-201ENST00000425048 ZNF595Q8IYB9 648 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 TCEANCQ8N8B7 351 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 LPGAT1Q92604 370 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 MAK16Q9BXY0 300 aaKnown RBP3.27□□□□□ -1.89
LINC01040-201ENST00000425048 PRRG4Q9BZD6 226 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 MYNNQ9NPC7 610 aa3.27□□□□□ -1.89
LINC01040-201ENST00000425048 VGLL3A8MV65 326 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 VILLO15195 856 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 SELEP16581 610 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 CETN2P41208 172 aa3.26□□□□□ -1.89
LINC01040-201ENST00000425048 TTC31Q49AM3 519 aaPredicted RBP3.26□□□□□ -1.89
LINC01040-201ENST00000425048 PLEKHS1Q5SXH7 462 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms