RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 UBE2R2Q712K3 238 aaPredicted RBP10.97□□□□□ -0.65
USP4-204ENST00000416417 SRRM1Q8IYB3 904 aaKnown RBP10.97□□□□□ -0.65
USP4-204ENST00000416417 ZCCHC10Q8TBK6 192 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 CD200R1Q8TD46 325 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 VPS50Q96JG6 964 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 SERPINB12Q96P63 405 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 SLX1AQ9BQ83 275 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 RBCK1Q9BYM8 510 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 DRC3Q9H069 523 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.97□□□□□ -0.65
USP4-204ENST00000416417 IARS2Q9NSE4 1012 aaKnown RBP10.97□□□□□ -0.65
USP4-204ENST00000416417 HCN3Q9P1Z3 774 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 DHRS7Q9Y394 339 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 DOPEY1Q5JWR5 2465 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 CENPEQ02224 2701 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 ARHGAP10A1A4S6 786 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 DYTNA2CJ06 578 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 GFYI3L273 518 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 CCNDBP1O95273 360 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 MPC1LP0DKB6 136 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 IL1RNP18510 177 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 MST1P26927 711 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 COILP38432 576 aaPredicted RBP10.96□□□□□ -0.65
USP4-204ENST00000416417 TNFSF10P50591 281 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 CCZ1BP86790 482 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 CCZ1P86791 482 aaPredicted RBP10.96□□□□□ -0.65
USP4-204ENST00000416417 TIAL1Q01085 375 aaKnown RBP eCLIP10.96□□□□□ -0.65
USP4-204ENST00000416417 PMP22Q01453 160 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 NAA25Q14CX7 972 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 TTLL9Q3SXZ7 439 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 HSP90AA5PQ58FG0 334 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 HIBCHQ6NVY1 386 aaPredicted RBP10.96□□□□□ -0.65
USP4-204ENST00000416417 VN1R4Q7Z5H5 301 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 BCORP1Q8N888 145 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 TRIM58Q8NG06 486 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 EEF1AKMT1Q8WVE0 214 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 VN1R1Q9GZP7 353 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 ATG10Q9H0Y0 220 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 CCDC68Q9H2F9 335 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 MKKSQ9NPJ1 570 aaPredicted RBP10.96□□□□□ -0.65
USP4-204ENST00000416417 C14orf105Q9NVL8 296 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 SLC17A6Q9P2U8 582 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 FBXO5Q9UKT4 447 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 PPP2R2CQ9Y2T4 447 aa10.96□□□□□ -0.65
USP4-204ENST00000416417 ITPR2Q14571 2701 aa10.96□□□□□ -0.66
USP4-204ENST00000416417 A8MUI8 341 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 SGK494L7N484 410 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 PRPF4O43172 522 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP4-204ENST00000416417 ZBTB14O43829 449 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 LCMT2O60294 686 aaKnown RBP10.95□□□□□ -0.66
USP4-204ENST00000416417 BMP10O95393 424 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 B3GALT4O96024 378 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 PRF1P14222 555 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 TDGF1P3P51864 188 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 EMP3P54852 163 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 TBPL1P62380 186 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 LONRF1Q17RB8 773 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 MINDY4Q4G0A6 757 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 ZNF324BQ6AW86 544 aaPredicted RBP10.95□□□□□ -0.66
USP4-204ENST00000416417 TMEM205Q6UW68 189 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 ZNF662Q6ZS27 426 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 NEK10Q6ZWH5 1172 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 LRRC8AQ8IWT6 810 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 KCT2Q8NC54 265 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 KCNJ9Q92806 393 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 MVB12AQ96EY5 273 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 SIGLEC10Q96LC7 697 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 AARSD1Q9BTE6 412 aaKnown RBP10.95□□□□□ -0.66
USP4-204ENST00000416417 TGIF2Q9GZN2 237 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 ZNF700Q9H0M5 742 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 HOMER3Q9NSC5 361 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 RIC8BQ9NVN3 520 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 SH3BGRL2Q9UJC5 107 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 NEU2Q9Y3R4 380 aa10.95□□□□□ -0.66
USP4-204ENST00000416417 LOC102723996A0A087X1L8 192 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 TRAV17A0A0B4J275 112 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 ZNF860A6NHJ4 632 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 ZNF839A8K0R7 811 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 PHF2O75151 1096 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 DNAJB6O75190 326 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 RDH16O75452 317 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 C8orf89P0DMQ9 161 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 MLNP12872 115 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 HSD17B2P37059 387 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 BCL6P41182 706 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 SKIV2L2P42285 1042 aaKnown RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 AVPR1BP47901 424 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 CDKN2DP55273 166 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 ABATP80404 500 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 MEF2AQ02078 507 aaPredicted RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 ZNF33BQ06732 778 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 ZRSR2Q15696 482 aaKnown RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 RBM20Q5T481 1227 aaKnown RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 GARNL3Q5VVW2 1013 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 RPUSD3Q6P087 351 aaKnown RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 CCDC137Q6PK04 289 aaKnown RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 GFRALQ6UXV0 394 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 NAT8LQ8N9F0 302 aa10.94□□□□□ -0.66
USP4-204ENST00000416417 FBXO15Q8NCQ5 510 aaPredicted RBP10.94□□□□□ -0.66
USP4-204ENST00000416417 MCUQ8NE86 351 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms