RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 LMX1AQ8TE12 382 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 RDH12Q96NR8 316 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 STRADBQ9C0K7 418 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 CRISPLD1Q9H336 500 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 MEAF6Q9HAF1 191 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 SLC17A6Q9P2U8 582 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 ACSBG2Q5FVE4 666 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 ZCCHC12Q6PEW1 402 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 TMEM25Q86YD3 366 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 CIB1Q99828 191 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 RDH14Q9HBH5 336 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 UTS2RQ9UKP6 389 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 KCNK6Q9Y257 313 aa11.61□□□□□ -0.55
PTPRF-205ENST00000414879 COL11A2P13942 1736 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-205ENST00000414879 TTC34A8MYJ7 566 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 DFNA5O60443 496 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 KLK1P06870 262 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 ENGP17813 658 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 CD70P32970 193 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 IL18R1Q13478 541 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 TMCO2Q7Z6W1 182 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-205ENST00000414879 ANKRD46Q86W74 232 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 TXNDC5Q8NBS9 432 aaKnown RBP11.6□□□□□ -0.55
PTPRF-205ENST00000414879 OR4C6Q8NH72 309 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 FBXL8Q96CD0 374 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 LRCH3Q96II8 777 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 MPP4Q96JB8 637 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 OR52B2Q96RD2 323 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 SLC12A9Q9BXP2 914 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 TXLNGYQ9BZA5 131 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 PELI2Q9HAT8 420 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 MARK1Q9P0L2 795 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 SLCO3A1Q9UIG8 710 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 LIPT1Q9Y234 373 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 A0A1W2PP55 124 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 KCNC1P48547 511 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 PSMD7P51665 324 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 CLCN7P51798 805 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 MRPS21P82921 87 aaKnown RBP11.6□□□□□ -0.55
PTPRF-205ENST00000414879 SEMG2Q02383 582 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 FBXO48Q5FWF7 155 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 C12orf40Q86WS4 652 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 NRROSQ86YC3 692 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 APCDD1Q8J025 514 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 ENKURQ8TC29 256 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 KCNC2Q96PR1 638 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 SLC17A9Q9BYT1 436 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 EPHA6Q9UF33 1036 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 CNOT6Q9ULM6 557 aaKnown RBP11.6□□□□□ -0.55
PTPRF-205ENST00000414879 TMEM5Q9Y2B1 443 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 POFUT2Q9Y2G5 429 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 GRXCR2A6NFK2 248 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 FOXO6A8MYZ6 492 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 GFRA2O00451 464 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 ANGPTL1O95841 491 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 UQCRC2P22695 453 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 DEFB103AP81534 67 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 CDK6Q00534 326 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 PCBP2Q15366 365 aaKnown RBP eCLIP11.6□□□□□ -0.559e-9■■■■■ 31
PTPRF-205ENST00000414879 DECR1Q16698 335 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 KLHL24Q6TFL4 600 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 IKBIPQ70UQ0 350 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 CBR4Q8N4T8 237 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 C12orf76Q8N812 135 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-205ENST00000414879 KDM1BQ8NB78 822 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 REXO4Q9GZR2 422 aaKnown RBP11.6□□□□□ -0.55
PTPRF-205ENST00000414879 CKLFQ9UBR5 152 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 LTBP1Q14766 1721 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 DDX60LQ5H9U9 1706 aaKnown RBP11.6□□□□□ -0.55
PTPRF-205ENST00000414879 A0A096LPI6 279 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 A0A0J9YVX5 310 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 ZCWPW2A0A1B0GU75 182 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 LOC285095A0A1B0GVY8 99 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 BPIP17213 487 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 PSMA1P25786 263 aaKnown RBP11.6□□□□□ -0.55
PTPRF-205ENST00000414879 CDH12P55289 794 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 BTN3A2P78410 334 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 ARHGAP19Q14CB8 494 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 KLHL26Q53HC5 615 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 C6orf136Q5SQH8 315 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 CRTC1Q6UUV9 634 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 OR4E2Q8NGC2 313 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 FAM81AQ8TBF8 368 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 HBEGFQ99075 208 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 NOL6Q9H6R4 1146 aaKnown RBP11.6□□□□□ -0.55
PTPRF-205ENST00000414879 PREBQ9HCU5 417 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 TMEM184CQ9NVA4 438 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 GPR34Q9UPC5 381 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 TMEM98Q9Y2Y6 226 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 IFT52Q9Y366 437 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 RPL36Q9Y3U8 105 aaKnown RBP11.6□□□□□ -0.55
PTPRF-205ENST00000414879 ZNF451Q9Y4E5 1061 aa11.6□□□□□ -0.55
PTPRF-205ENST00000414879 LOXHD1Q8IVV2 1947 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 HYKKA2RU49 373 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 TAF4O00268 1085 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 BCAS2O75934 225 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-205ENST00000414879 PAK4O96013 591 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-205ENST00000414879 GIMD1P0DJR0 217 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 DGCR6Q14129 220 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 PEG10Q86TG7 708 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms