RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 PLD3Q8IV08 490 aa19.41■□□□□ 0.7
PTCD3-202ENST00000409326 TTC29Q8NA56 475 aaPredicted RBP19.41■□□□□ 0.7
PTCD3-202ENST00000409326 RERGQ96A58 199 aaPredicted RBP19.41■□□□□ 0.7
PTCD3-202ENST00000409326 THAP11Q96EK4 314 aa19.41■□□□□ 0.7
PTCD3-202ENST00000409326 TMEM109Q9BVC6 243 aa19.41■□□□□ 0.7
PTCD3-202ENST00000409326 SARGQ9BW04 601 aa19.41■□□□□ 0.7
PTCD3-202ENST00000409326 CAPS2Q9BXY5 557 aa19.41■□□□□ 0.7
PTCD3-202ENST00000409326 CPSF2Q9P2I0 782 aaKnown RBP19.41■□□□□ 0.7
PTCD3-202ENST00000409326 LGALS13Q9UHV8 139 aa19.41■□□□□ 0.7
PTCD3-202ENST00000409326 TMCO1Q9UM00 188 aa19.41■□□□□ 0.7
PTCD3-202ENST00000409326 PTPRQQ9UMZ3 2332 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 KCNE1BA0A087WTH5 132 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 FOXO6A8MYZ6 492 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 CCNT2O60583 730 aaKnown RBP19.4■□□□□ 0.7
PTCD3-202ENST00000409326 CCNYL3P0C7X3 344 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 TLE3Q04726 772 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 PDK4Q16654 411 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 YOD1Q5VVQ6 348 aaPredicted RBP19.4■□□□□ 0.7
PTCD3-202ENST00000409326 NXPE4Q6UWF7 544 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 ZNF517Q6ZMY9 492 aaPredicted RBP19.4■□□□□ 0.7
PTCD3-202ENST00000409326 DSELQ8IZU8 1212 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 NDC1Q9BTX1 674 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 LHX9Q9NQ69 397 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 STARD5Q9NSY2 213 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 TMEM216Q9P0N5 145 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 PADI1Q9ULC6 663 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 EPG5Q9HCE0 2579 aa19.4■□□□□ 0.7
PTCD3-202ENST00000409326 FEZF1A0PJY2 475 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 K7EPI3 171 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 MEN1O00255 615 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 EIF2S1P05198 315 aaKnown RBP19.39■□□□□ 0.69
PTCD3-202ENST00000409326 KLK3P07288 261 aaPredicted RBP19.39■□□□□ 0.69
PTCD3-202ENST00000409326 SBK3P0C264 359 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 ITPKBP27987 946 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 BCL6P41182 706 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 ARSFP54793 590 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 REEP5Q00765 189 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 MEF2AQ02078 507 aaPredicted RBP19.39■□□□□ 0.69
PTCD3-202ENST00000409326 PCBP2Q15366 365 aaKnown RBP eCLIP19.39■□□□□ 0.69
PTCD3-202ENST00000409326 PRTGQ2VWP7 1150 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 MANEAQ5SRI9 462 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 BROXQ5VW32 411 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 ZNF385CQ66K41 422 aaPredicted RBP19.39■□□□□ 0.69
PTCD3-202ENST00000409326 SLCO4C1Q6ZQN7 724 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 TMEM151AQ8N4L1 468 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 CSNK1A1LQ8N752 337 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 SNX31Q8N9S9 440 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 PROKR1Q8TCW9 393 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 AIF1LQ9BQI0 150 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 SPNS1Q9H2V7 528 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 TXLNGQ9NUQ3 528 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 WDR70Q9NW82 654 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 OPTCQ9UBM4 332 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 DCDC2Q9UHG0 476 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 PCDHGA4Q9Y5G9 962 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 CCDC88CQ9P219 2028 aa19.39■□□□□ 0.69
PTCD3-202ENST00000409326 LOC101059948A0A1B0GTJ6 334 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 TRBC2A0A5B9 178 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 TXNDC9O14530 226 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 CLGNO14967 610 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 SMIM24O75264 130 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 GLRA3O75311 464 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 C1GALT1C1LP0DN25 315 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 EMP3P54852 163 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 ZNF844Q08AG5 666 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 FAM214AQ32MH5 1076 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 ATG9BQ674R7 924 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 METTL2BQ6P1Q9 378 aaKnown RBP19.38■□□□□ 0.69
PTCD3-202ENST00000409326 PKD1L2Q7Z442 2459 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 VN1R4Q7Z5H5 301 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 VASH2Q86V25 355 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 TBC1D19Q8N5T2 526 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 PTGR2Q8N8N7 351 aaPredicted RBP19.38■□□□□ 0.69
PTCD3-202ENST00000409326 MFSD9Q8NBP5 474 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 GBP5Q96PP8 586 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 CCNL2Q96S94 520 aaPredicted RBP19.38■□□□□ 0.69
PTCD3-202ENST00000409326 DPH2Q9BQC3 489 aaPredicted RBP19.38■□□□□ 0.69
PTCD3-202ENST00000409326 EHD1Q9H4M9 534 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 CUTCQ9NTM9 273 aa19.38■□□□□ 0.69
PTCD3-202ENST00000409326 DHCR7Q9UBM7 475 aaKnown RBP19.38■□□□□ 0.69
PTCD3-202ENST00000409326 RUVBL1Q9Y265 456 aaKnown RBP19.38■□□□□ 0.69
PTCD3-202ENST00000409326 TNPO3Q9Y5L0 923 aaKnown RBP19.38■□□□□ 0.69
PTCD3-202ENST00000409326 HYKKA2RU49 373 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 STX16-NPEPL1H3BU86 382 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 STX16O14662 325 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 P2RX6O15547 441 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 CTIFO43310 598 aaKnown RBP19.37■□□□□ 0.69
PTCD3-202ENST00000409326 LCMT2O60294 686 aaKnown RBP19.37■□□□□ 0.69
PTCD3-202ENST00000409326 LIFP15018 202 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 KRT4P19013 534 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 EPORP19235 508 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 VARSP26640 1264 aaKnown RBP19.37■□□□□ 0.69
PTCD3-202ENST00000409326 SCTRP47872 440 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 UCNP55089 124 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 SRSF6Q13247 344 aaKnown RBP19.37■□□□□ 0.69
PTCD3-202ENST00000409326 HKDC1Q2TB90 917 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 BEND6Q5SZJ8 279 aaPredicted RBP19.37■□□□□ 0.69
PTCD3-202ENST00000409326 C16orf46Q6P387 395 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 TRABD2AQ86V40 505 aa19.37■□□□□ 0.69
PTCD3-202ENST00000409326 IQCKQ8N0W5 287 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms